Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02569 ATGGACGGTGGCGGACACTACAACCCTCGCACCGTTGAGGAAGTTTTCCGCGACTTCAAGGGTCGCAGAGCTGCTATGATCAAAGCCCTCACCACTGGTCTCTCTCTTGACTGCGATTATCAGAATAAGGAGAACCTCTGTCTGTATGGATACCCCACTGAACAGTGGGAAGTTAATTTACCCGCTGAAGAAGTTCCTCCTGAACTTCCCGAGCCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAAGAGAAGGACTGGCTAACTTTAGTTGCAGTTCACAGTGATGCATGGCTAATTGCAGTGGCTTTCTACTTTGGAGCAAGATTTGGTTTTGACAGAGCTGACAGGAAACGTCTATTCACTATGATTAATGATCTGCCAACAATTTTTGAGGTTGTGACTGGAACTGCAAAGAAACAGTCGAAGGAAAAGTCATCAGTTTCAAACCACACAAACAGCAAATCAAAATCTAGTTCAAAAGGGCGAGGATCTGAATCGGTTAAGCAAACAAAGCAAGCAAAGGAAGAGGATGAGGGTGCAGAGGAATATGAGGAGGAGCATGGGGAGACCCTGTGTGGTGCATGTGGGGAGCTCTATGCAGCTGATGAGTTTTGGATTTGCTGCGACATATGTGAGAGGTGGTTCCATGGCAAGTGTGTGAAGATCACGCCTGCTCGGGCTGAGCACATTAAACAGTACAAATGCCCCACTTGCAGCAACAAGAGAGCACGGCCTTGA 744 0.4758 MDGGGHYNPRTVEEVFRDFKGRRAAMIKALTTGLSLDCDYQNKENLCLYGYPTEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLTLVAVHSDAWLIAVAFYFGARFGFDRADRKRLFTMINDLPTIFEVVTGTAKKQSKEKSSVSNHTNSKSKSSSKGRGSESVKQTKQAKEEDEGAEEYEEEHGETLCGACGELYAADEFWICCDICERWFHGKCVKITPARAEHIKQYKCPTCSNKRARP 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02569 247 MobiDBLite consensus disorder prediction 143 168 - -
Aip03g02569 247 MobiDBLite consensus disorder prediction 143 184 - -
Aip03g02569 247 Pfam Alfin 11 137 IPR021998 GO:0006355|GO:0042393
Aip03g02569 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 242 IPR013083 -
Aip03g02569 247 SMART PHD_3 193 241 IPR001965 -
Aip03g02569 247 ProSitePatterns Zinc finger PHD-type signature. 194 240 IPR019786 -
Aip03g02569 247 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 247 - -
Aip03g02569 247 PANTHER CPG BINDING PROTEIN 3 247 IPR045104 GO:0006355|GO:0042393
Aip03g02569 247 SUPERFAMILY FYVE/PHD zinc finger 184 244 IPR011011 -
Aip03g02569 247 CDD PHD_AL_plant 193 243 IPR044104 -
Aip03g02569 247 Pfam PHD-finger 194 243 IPR019787 -
Aip03g02569 247 ProSiteProfiles Zinc finger PHD-type profile. 191 243 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02569 Aip-Chr3 45677393 45686748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02569 1 246 Alfin-like Transcription Factor Family AT3G42790 71.429 1.46e-111 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Aip03g02569 Alfin 6.9e-59 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02569 - - jre:109009410 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g02569 03 45677393 45686748 Aip03g02569 03 45677393 45686748 ECH