Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02560 ATGAAAAAAGGGTGCTTAGGACCCAATCTGAAGCTCACTGTTCCTGTTCCTGCAACTCATCACCCTTCTTTTCCAAGCTTCCTGAATGAAAGCGGCACGTTTATTGATGGGAACCTGCTTGTCAATGGCGACGGAGTTCTGATCGCTTCTCAGGGTGAAGTGGGAACTCCACCCCCAGTAAGGGCAATAGACAACAAACTAAGTTTGGCAGACATTGACACAATCAGAGTGATTGGAAAGGGAAATGGAGGGATTGTGCAGTTGGTGCAACACAAATGGACTAATCAATTTTTCGCATTAAAGGAAATCCGAATGATGGTTGAGGAGCCTATGCACACGCAGATAGCACGAGAGCTAAAAATCAATCAGTCAGCACAATGTCCATATGTTGTTGTTTACTACCAATCATTCTACAATAATGGGGTCTTATCAATCATCTTAGAGTACATGGATGGAGGGTCCTTGGAAGATTTTCTTAGCATAGTGAAAACAATTCCAGAGCCATATCTTGCCGCGATCTGCAAGCAGGTGCTGAAGGGTTTAATTTATCTTCATCATGAAAAACATATTATCCATAGGGACTTAAAGCCTTCTAATTTGTTGATAAATCATAGAGGAGAAGTAAAGATTACTGATTTTGGTGTGAGCGCAATCATGGACACCACATCTGGTCTAGCTAATACTTTTATTGGCACATACAGCTACATGTCTCCAGAGAGAATTACTGGAAACCCTGGTGGTTACAACTATAGAAGTGATATATGGAGCTTGGGACTGATATTGCTCAAGTGTGCTACAGGAAAGTTTCCATATACACCACCTGATAAAAAAGAAGGATGGGAAAATATCTACCAGCTTATTGAAATCATTGTCGAAAAACCTCCGCCGAGTGCTCCATCTGATCAATTTTCTCTGGAATTTTGTTCTTTCATCTCTGCATGTTTACAGAAAAATCCAAGGGATAGAAAGTCAGCTCCAGACCTTGTGAGACATCCATTTATCAACATGTATGAGGACTTGGATGTGGACCTTTCAGCATACTTCTCCAATGGAGGATCTACACCTGCAACCATATAA 1077 0.4132 MKKGCLGPNLKLTVPVPATHHPSFPSFLNESGTFIDGNLLVNGDGVLIASQGEVGTPPPVRAIDNKLSLADIDTIRVIGKGNGGIVQLVQHKWTNQFFALKEIRMMVEEPMHTQIARELKINQSAQCPYVVVYYQSFYNNGVLSIILEYMDGGSLEDFLSIVKTIPEPYLAAICKQVLKGLIYLHHEKHIIHRDLKPSNLLINHRGEVKITDFGVSAIMDTTSGLANTFIGTYSYMSPERITGNPGGYNYRSDIWSLGLILLKCATGKFPYTPPDKKEGWENIYQLIEIIVEKPPPSAPSDQFSLEFCSFISACLQKNPRDRKSAPDLVRHPFINMYEDLDVDLSAYFSNGGSTPATI 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02560 358 Gene3D Transferase(Phosphotransferase) domain 1 152 354 - -
Aip03g02560 358 SMART serkin_6 72 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g02560 358 ProSiteProfiles Protein kinase domain profile. 72 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g02560 358 PANTHER MAP KINASE KINASE 1 358 - -
Aip03g02560 358 Gene3D Phosphorylase Kinase; domain 1 60 151 - -
Aip03g02560 358 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Aip03g02560 358 SUPERFAMILY Protein kinase-like (PK-like) 70 339 IPR011009 -
Aip03g02560 358 CDD PKc_MAPKK_plant_like 70 338 - -
Aip03g02560 358 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 358 - -
Aip03g02560 358 Pfam Protein kinase domain 74 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g02560 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02560 Aip-Chr3 45135810 45139596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02560 30 353 MAP Kinase Kinase Gene Family AT4G26070 64.198 1.40e-158 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Aip03g02560 Pkinase 2e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02560 K20603 - gmx:100789241 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03382 01 136869798 136873710 Aip03g02560 03 45135810 45139596 PCT