Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02535 ATGAGTTGGCGGAGGGTGTTGAAGTCTGCGCAGGCACTTGCTGCACACACCTTTCTGTTGTCTCATTATTTAATTATTTCAGAAAGTTTTATTTTTGGGGGCTGTAATTTGCTTTCGATAATATTTTTCCCTCTTTGGATGTTTCATGCTGTTGTGGCTCGAGGAAGGTTTTCACTACCAGCACCATCAGCCCCGCGTAATCGAAATTGGGCACCGTGCCATGCCGTCGTTGCAATGCCATTGCTTATTGCATTTGAATTGCTCCTTTGTATATATCTTGAGAGCTTATACGTTCGTCACTTTCCAGCAGTCAATCTGAAGATCGTGTTCCTTCCCTTACTAATATTTGAAATCATCATTCTCATTGACAATTTCAGAATGTGTAGGGCTCTAATGCCAGGAGATGAAGAGAACATGAGTGATGAGGCGATATGGGAAACTCTTCCTCACTTTTGGGTTGCAATCTCTATGGTCTTCTTCATTGCTGCTACAGTGTTCACACTCCTAAAACTTAGTGGTGATGTAGGTGCTCTGGGCTGGTGGGACTTATTTATTAACTTTGCCATTGCCGAGTGTTTTGCTTTTCTTGTATGTACAAAGTGGTCTAATCCGGTGATTCATAGAAATCCAAGAGAAGCCAGTTCTTCTTCTACTACTGTTAGATATCTTGACTGGAACGGCGGTTTAGTTGTTTCTTCCGAGGAAAATCAACATCCAGAGAGAATGTGTAGCCTGCAAGACATAGGAGGCCATTTTATGAAAGTACCGATTATTATATTCCAGATTCTTCTTTGTATGTACTTGGAGGGAACACCTGCTTGTGCCAGAAAGATACCTCTACTGATACTTTTCTCTCCCCTTTTCACGCTGCAAGGTGCTGGTGTACTGTTAGCTGGATCTAAGTTAGTGGAGAAACTTGTTTTGCTGCTAAACAGTGGAGCTGGTGGGGGAATTTATATTAGAATTTCTTCAACAGCTCATGATTGCTTGGGGTTCTTGCACCATGGTTCTAGCAGGTTACTAGGTTGGTGGTCAATTGATGAAGGTAGTCGGGAAGAACAGGCACGCTTATACCAAGAGGGAGCATCTGGGTATAATACGTTCTGCGGTTATCCACCTGAGATTGTTAAGAAAATGCCTAAAAAAGATCTTGCTGAGGAGGTTTGGAGACTCCAGGCAGCTCTTGGTGAACAGACAGAAATTACAAAATACAGCCAGCAAGAGTATGAAAGACTTCAAAATGAAAAAGTGTTGTGTAGAGTTTGTTTCGAGGGAGAGATAAGCGTTGTACTTCTCCCATGCCGGCATCACATCCTTTGCAGCAATTGCTCCGAGAAATGCAAGAATTGCCCGATTTGCCGCGTCACGATTGCAGAGCGGCTACCTGTGTATGATGTTTAG 1401 0.4304 MSWRRVLKSAQALAAHTFLLSHYLIISESFIFGGCNLLSIIFFPLWMFHAVVARGRFSLPAPSAPRNRNWAPCHAVVAMPLLIAFELLLCIYLESLYVRHFPAVNLKIVFLPLLIFEIIILIDNFRMCRALMPGDEENMSDEAIWETLPHFWVAISMVFFIAATVFTLLKLSGDVGALGWWDLFINFAIAECFAFLVCTKWSNPVIHRNPREASSSSTTVRYLDWNGGLVVSSEENQHPERMCSLQDIGGHFMKVPIIIFQILLCMYLEGTPACARKIPLLILFSPLFTLQGAGVLLAGSKLVEKLVLLLNSGAGGGIYIRISSTAHDCLGFLHHGSSRLLGWWSIDEGSREEQARLYQEGASGYNTFCGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRVCFEGEISVVLLPCRHHILCSNCSEKCKNCPICRVTIAERLPVYDV 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02535 466 SUPERFAMILY RING/U-box 410 461 - -
Aip03g02535 466 Pfam Transmembrane Fragile-X-F protein 40 289 IPR019396 -
Aip03g02535 466 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 466 - -
Aip03g02535 466 ProSiteProfiles Zinc finger RING-type profile. 419 454 IPR001841 -
Aip03g02535 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 464 IPR013083 -
Aip03g02535 466 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 466 - -
Aip03g02535 466 Pfam Zinc finger, C3HC4 type (RING finger) 416 458 - -
Aip03g02535 466 SMART ring_2 419 453 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02535 Aip-Chr3 44014706 44020479 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02535 1 466 C3H Transcription Factor Family AT1G73950 69.313 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02535 - - gmx:100791390 797.734