Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02521 ATGTCATCATCAAGTGGAACCATTTGGAGCTATGAAGAAGAGAAAGCATTTGAGAATGCCATAGCCATGCATTGGATTGAAGAAGACTCAAAAGAGCATTGGGAGAAGATTGCTGAAGAAGTTCCAACCAAAACCATAGAAGAATTGAAGCAACATTACCAGTTACTAGTGGAAGATGTAACTGCAATAGAAGCTGGTCAAATACCATTCCCAAACTATACATCAGAAGAAACTACATCTTCAAGTAAAGATCTCCATGGATCTTCCAAGTCTTCAAATTCTGATAAGAGATCAAATTGTAACTATGGAAGTGGATTCTCTGGCTTAGGACATGATTCCTCAACCTCACATAATGGTAAAGGATCCTTGTCAAGATCATCAGAACAAGAAAGGAGAAAAGGAATTCCATGGACAGAAGAAGAACACAGGCTATTCTTACTTGGTCTAGACAAGTTTGGAAAAGGAGATTGGAGAAGCATTTCAAGGAACTTTGTGATTTCAAGGACTCCAACACAAGTAGCAAGTCATGCACAAAAGTACTTCATAAGATTGAACTCAATGAATAGAGATAGAAGAAGGTCTAGTATCCATGACATTACAAGTGTCAACAATGGAGATGTGGCCAATAATCAAGCACCAATTACAGGACAGCATGGAGGCACAACAATCTCATCAAGCACAATAGCTATGGGACAATCAATGAAGCATAGAGCACAACCACACCATCATCATCATCATATACCTGCTGGTTTAGGCATGTATGGTGCACCAGTTGGGCACCCTGTGGCTGCTCCTCATGGCCATATGGCATCTGCAGTTGGAACTCCGGTCATGCTTCCTCCCGGACCGCATCCGCATCCTCATCATCCACCTTATGTTGTTCCTCTTGCTTATCCAATGGCACCTCCAACAATGCACCAATAA 924 0.4156 MSSSSGTIWSYEEEKAFENAIAMHWIEEDSKEHWEKIAEEVPTKTIEELKQHYQLLVEDVTAIEAGQIPFPNYTSEETTSSSKDLHGSSKSSNSDKRSNCNYGSGFSGLGHDSSTSHNGKGSLSRSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVANNQAPITGQHGGTTISSSTIAMGQSMKHRAQPHHHHHHIPAGLGMYGAPVGHPVAAPHGHMASAVGTPVMLPPGPHPHPHHPPYVVPLAYPMAPPTMHQ 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02521 307 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 133 183 IPR006447 GO:0003677
Aip03g02521 307 PANTHER TRANSCRIPTION FACTOR MYBS1 5 306 - -
Aip03g02521 307 MobiDBLite consensus disorder prediction 71 123 - -
Aip03g02521 307 CDD SANT 9 57 IPR001005 -
Aip03g02521 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 185 IPR017930 -
Aip03g02521 307 SMART sant 133 183 IPR001005 -
Aip03g02521 307 SMART sant 5 59 IPR001005 -
Aip03g02521 307 ProSiteProfiles SANT domain profile. 4 53 IPR017884 -
Aip03g02521 307 ProSiteProfiles SANT domain profile. 137 185 IPR017884 -
Aip03g02521 307 Gene3D - 1 70 - -
Aip03g02521 307 SUPERFAMILY Homeodomain-like 7 61 IPR009057 -
Aip03g02521 307 ProSiteProfiles Myb-like domain profile. 129 181 IPR001005 -
Aip03g02521 307 ProSiteProfiles Myb-like domain profile. 9 57 IPR001005 -
Aip03g02521 307 SUPERFAMILY Homeodomain-like 131 186 IPR009057 -
Aip03g02521 307 Pfam Myb-like DNA-binding domain 136 181 IPR001005 -
Aip03g02521 307 Pfam Myb-like DNA-binding domain 9 55 IPR001005 -
Aip03g02521 307 MobiDBLite consensus disorder prediction 71 135 - -
Aip03g02521 307 PANTHER TRANSCRIPTION FACTOR KUA1 5 306 - -
Aip03g02521 307 Gene3D - 135 187 - -
Aip03g02521 307 CDD SANT 136 181 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02521 Aip-Chr3 43531469 43532902 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip03g02521 Myb_DNA-binding 6.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02521 - - vun:114176836 484.952