Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02471 ATGGTGCAATCAAGGAAGTTCAGAGGTGTCAGGCAGCGTCATTGGGGTTCTTGGGTTTCCGAGATTCGTCACCCACTCTTGAAGAGGAGGGTGTGGTTAGGGACATTTGAAACTGCGGAAGAAGCGGCAAGAGCCTACGATCAAGCTGCAATTTTGATGAGTGGCCGGAATGCCAAGACCAATTTCCCCATCATACACACACCGGACGGTGATCCAAAGGTTGTCAGCTCCACCGAGAAAGCGGCGGCTCATTCTTCCTCCGCCTCAGCCGCCTCCAATAAGGATCTAGAGGAGATTCTACACGCCAAGCTTCGAAAATGCGGGAAAGTTCCTTCACCTTCCATGACATGCTTGAGGCTCGACACGGAGAATTCACACATTGGTGTGTGGCAGAAGCGCGCTGGCCAGCGTTCTGATTCCAATTGGGTCATGAGGGTTCAGCTCGGTGCTGGAAACAACAAAACTAGTGGTGCTGCCATCAGTTCTATGGTTGCTTCTTCTTCTTCTTCCTCGTCTTCTTCTTGTGATCTTCTTCAGTCTCCGTCGTCAACCGTATCCGGTGGTGATCTGGTTAGGGGAGAGATGGATGAGGAGGAGAGAATCGCATTGCAGATGATTGAAGAGCTTCTCAACAGAAATTGTCCAAGTCCATCGTCCTTCAACAACAACAACTTGGATGAAACGGGTGTTCACCATGACCATAATAATAATGCTACCTTCTTTCTTGGATAA 732 0.4945 MVQSRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPIIHTPDGDPKVVSSTEKAAAHSSSASAASNKDLEEILHAKLRKCGKVPSPSMTCLRLDTENSHIGVWQKRAGQRSDSNWVMRVQLGAGNNKTSGAAISSMVASSSSSSSSSCDLLQSPSSTVSGGDLVRGEMDEEERIALQMIEELLNRNCPSPSSFNNNNLDETGVHHDHNNNATFFLG 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02471 243 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Aip03g02471 243 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Aip03g02471 243 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Aip03g02471 243 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Aip03g02471 243 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 220 - -
Aip03g02471 243 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Aip03g02471 243 MobiDBLite consensus disorder prediction 168 187 - -
Aip03g02471 243 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Aip03g02471 243 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Aip03g02471 243 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 220 - -
Aip03g02471 243 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Aip03g02471 243 MobiDBLite consensus disorder prediction 168 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02471 Aip-Chr3 41960428 41961581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02471 1 213 AP2-EREBP Transcription Factor Family AT1G15360 58.685 7.87e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip03g02471 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02471 - - adu:107472039 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g02471 03 41960428 41961581 Aip08g03067 08 120409040 120410209 ECH
Aip03g02471 03 41960428 41961581 Aip03g02471 03 41960428 41961581 ECH