Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02466 ATGGCCTCCGAACCATATATTATAGAGTTACCTTCCTCCTCTTTTCGGAGGTTTCGTTGTTTGAACCCTAATACCGTACCATTCTCACTTCCATTCCTCCGCCTTCCAACTAACCTTCCCTTCCCTTCGCTTCCCTTCAATTTCTTCTCTATATTGTTCGCTCTCTCTTGCTTTCTTTCTTCTTCGATTGTTCAGAGATACATACAAGACATGGCTGCAGCAGAGGCAGCTCAAGCTGCCGCTGGTCCACGGTATGCACCCGATGATCCCACCCTCCCTACGCCATGGAAGGGGCTAATTGATGGAAGCACTGGTCTTTTGTACTACTGGAACCCTGAAACTAATGTCACCCAGTATGAGAAACCTCCCCCTTTGCCTTCGGGCCCTGCTCCGGCTGCTTCTACACCCAACATGGCGCCCATACCTGTGGCTCATGCGATGCAATCTGGTGGGATGATGGGGCAGCATGGGCAGCAAATGCTTCAGTCCTCTCAACAGCAAGGGAGTAACCTTGCTCAGCAACATGGGCCAATGATGCCACAACAGCAGAGTTCGCATGTGGCATCTCAGCAGAAGCCATCTCCGGTTGCACAAGGGGTGCAACAGCAGAATTTGCAGTTGGCACAGTCCATGCCACAACCAGGGTTTAATCAGGCTGGACAGCATTCAATGCCGCATCAGGGACAGCATTCAATGCAGCCTCAGGGACAGTATCCCATGCAACCCCAAGGGCAACAAATGGTCCAGCCTAAAGGGCAGCAGATGACACAACAACCACATCAGATGCATTATCAGATGCAGCCCCAAGGTATCAATGCCCAACAATTTGGTCAAGGAGCATCTCAGGCTCAGGGCTCACATTCTGTGCAACCACAAGCACATCAATTCGCCCCCCAGAACATGCATTATATGCCATATCAGCCAAACATGCCTCAACCTGTGCAGCAAAGTTCCCAGCATAACATGCATGGTCATTCTTATGAAAACCAACAAGACTTCAAATCAGCATTCCCAAAGATAGAGGAACCAGAGTTTAAAAATGAAAACCAGTTTGGTGGCGCACCAGGAAGCATACAACAGTCTCCTTCTGCAGTGCCATTACAACAGGGTAGTTCTTATCCAGTTTACCAACATGGTCCTAGCTTTCAAAACCAGATGGGGCCTGGTATGATGCATGGTCATCCACCCAATGTCCATCCTGGAAGCCAAAAGATGGGACATGCAGATAGTTTTCATGGTAGAGCTGGGAATGAATATTACTATAACTCTAGCAAAGAGATGCCAGCTATGGGTCCTCAGCAGCCAAATATTGCACCAATACCCATTTCAACAAAGCAGCAGGATATGAGAATGAGCAGCGGCCCTTTTCAAAATGTAATGCCTAGTGGAAATGGAAGTGGTATCCCAGGTCATCCAATGCACATGTTTCCACCAGTAGGAGGGCATCCACCTCTCTCAAGTAACCCCTTGAAAGGACCTCCGTATATGGGATCTTCAGATGTTACTGATATGACACCTGCTGAAATTTATTGTCAGCAACATGAAGTTACAGCAACGGGTGACAACATTCCACCTCCTTTTATGACATTTGATGCTACTGGATTTCCTCCAGAGATTTTGAGAGAGATATATTCTGCTGGCTTCTCAAACCCAACACCAATTCAGGCTCAAACTTGGCCAGTAGCACTGCAAGGTAGGGACATAGTGGCAATTGCAAAAACAGGCTCTGGCAAAACATTGGGCTACTTAATGCCTGCATTCATCCTTCTTAGGCAGAGAAGGAATAATCCTTTGAATGGCCCCACTGTCTTGGTTTTAGCTCCAACACGTGAACTTGCTACACAGATCCAAGATGAGGCCGTCAAATTTGGAAGATCTTCACGTTTCTCTTGCACGTGTTTGTATGGTGGAGCACCCAAAGCCCAACAGCTAAAAGAGTTAGATCGGGGAGCAGACATTGTTGTTGCCACACCTGGCCGACTCAATGACATCCTTGAAATGAAGAAAATTGACTTTGGGCAAGTTTCACTGCTTGTGCTTGATGAGGCTGACCGTATGCTTGACATGGGTTTTGAACCTCAAATCCGGAAAATTGTTAATGAGATTCCACCACGTAGGCAAACTCTCATGTATACGGCAACATGGCCAAAAGAAGTAAGAAAAATTGCCAGTGACCTGCTCGTTAATCCTGTTCAGGTTAACATTGGAAGTGTTGATGAGCTTGCCGCAAATAAAGCTATCACACAGTATGTTGAATTTGTCCCTCAAATGGAGAAGCAGAGGCGATTAGAGCAGATCCTCAGATCCCAAGAACGGGGCTCTAAGGTTATTATTTTTTGTTCCACAAAGAGGTTATGTGATCAACTTGCCCGTAGTATTGGTCGCAATTATGGGGCTGCTGCAATTCATGGTGACAAGTCTCAAAGTGAGAGGGATTGGGTTTTAAATCAGTTCCGGAGTGGGAAGTCACCAGTTTTAGTTGCCACTGATGTTGCTGCTCGTGGGCTTGACATCAAGGATATAAGGGTGGTTATAAACTATGATTTCCCTACTGGAGTTGAGGATTATGTACACCGAATTGGAAGAACTGGACGGGCAGGTGCTACTGGAGTATCGTACACCTTTTTCTCGGAGCAGGACTGGAAACATGCATCTGATTTAATCAAAGTCTTGGAGGGTGCAAACCAGCATGTGCCTCCAGAGCTAAGACAGATGACCTTGCGCGGACCACCAAACTTTGGAAAAGAGCGGGGTGGGATGAGTCGTTTCGACTCTGGTGGTGGTGGGCGTTGGGACAACGGTGGTCGTGGTGGCATGAGGGATGGGGGCTTTGGTGGTCGTGGTGGCATGAGAGATGGTGGCTTTAGTGGTCGAGGCGGCATGAGGGATGGTAGCTTTGGTGGCCGAGGTGGCATGAGGGAGAGTGGATTCAGCAATGATGGTGGCATGAGAGATGGTGGCTTTGGTGCTCATGGTGCTAGCGGTCAAGGTGGGAGAGTTGATATGTTTGGTGGTAGGGGAAATAGAGGTCGAGGATTTGGTGGCCCTCGTGGTGGTCATGCTGGGTGGGGTAGAGGGGATCGTGGTCCAAATGACCGATTCAACATGGATGGAAGAGGAAGAGGGCGAGGACGTGGGCGATTAGACAACAGAAGAGATGTTGGATACAGGAATAGAGGCAGAAGCCGTAGCCGTAGCCCAGAGAGAGTACGAACATGGGACTATAGTAGCAGAAGTCGTAGTAGGAGTTGCAGCAGTAGGAGCTGGAGCCGGAGCCGGAGCCGAAGCAGAAGCCGCAGTTGGTCGCGTGGTCGCAGTCGGAGTCGCAGCTATAGCCCTAGCCCTCGTCGGAGTCGAAGCCGCAGTCGTAGCGGTCGCAGTTACAGCCGCAGCCGAAGTCCCCGTAGAAGTCCCAGCTATGATAGGCGTGATAGGACAGATCAACACCATTCTGATCAAAAGGATTATAGAGAACCAGAGGTCCAAGCTCCCAATCCGGGAGTGTCTCCAAGCTCCCAAGGGCAGCAGAATTCGATTTTGGGAACTGATCAAGTGGATCAGGCGCCACTGGTTGCTGGGAGTGGTGTCCCAGAAGATCCCAATGCTCTGGCATAG 3615 0.4918 MASEPYIIELPSSSFRRFRCLNPNTVPFSLPFLRLPTNLPFPSLPFNFFSILFALSCFLSSSIVQRYIQDMAAAEAAQAAAGPRYAPDDPTLPTPWKGLIDGSTGLLYYWNPETNVTQYEKPPPLPSGPAPAASTPNMAPIPVAHAMQSGGMMGQHGQQMLQSSQQQGSNLAQQHGPMMPQQQSSHVASQQKPSPVAQGVQQQNLQLAQSMPQPGFNQAGQHSMPHQGQHSMQPQGQYPMQPQGQQMVQPKGQQMTQQPHQMHYQMQPQGINAQQFGQGASQAQGSHSVQPQAHQFAPQNMHYMPYQPNMPQPVQQSSQHNMHGHSYENQQDFKSAFPKIEEPEFKNENQFGGAPGSIQQSPSAVPLQQGSSYPVYQHGPSFQNQMGPGMMHGHPPNVHPGSQKMGHADSFHGRAGNEYYYNSSKEMPAMGPQQPNIAPIPISTKQQDMRMSSGPFQNVMPSGNGSGIPGHPMHMFPPVGGHPPLSSNPLKGPPYMGSSDVTDMTPAEIYCQQHEVTATGDNIPPPFMTFDATGFPPEILREIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNPLNGPTVLVLAPTRELATQIQDEAVKFGRSSRFSCTCLYGGAPKAQQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGSVDELAANKAITQYVEFVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARSIGRNYGAAAIHGDKSQSERDWVLNQFRSGKSPVLVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVSYTFFSEQDWKHASDLIKVLEGANQHVPPELRQMTLRGPPNFGKERGGMSRFDSGGGGRWDNGGRGGMRDGGFGGRGGMRDGGFSGRGGMRDGSFGGRGGMRESGFSNDGGMRDGGFGAHGASGQGGRVDMFGGRGNRGRGFGGPRGGHAGWGRGDRGPNDRFNMDGRGRGRGRGRLDNRRDVGYRNRGRSRSRSPERVRTWDYSSRSRSRSCSSRSWSRSRSRSRSRSWSRGRSRSRSYSPSPRRSRSRSRSGRSYSRSRSPRRSPSYDRRDRTDQHHSDQKDYREPEVQAPNPGVSPSSQGQQNSILGTDQVDQAPLVAGSGVPEDPNALA 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02466 1204 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 366 998 - -
Aip03g02466 1204 Gene3D - 738 908 IPR027417 -
Aip03g02466 1204 SMART helicmild6 783 867 IPR001650 -
Aip03g02466 1204 SMART ultradead3 547 750 IPR014001 -
Aip03g02466 1204 Pfam DEAD/DEAH box helicase 552 722 IPR011545 GO:0003676|GO:0005524
Aip03g02466 1204 ProSiteProfiles WW/rsp5/WWP domain profile. 90 124 IPR001202 GO:0005515
Aip03g02466 1204 SMART ww_5 91 124 IPR001202 GO:0005515
Aip03g02466 1204 MobiDBLite consensus disorder prediction 148 263 - -
Aip03g02466 1204 MobiDBLite consensus disorder prediction 352 384 - -
Aip03g02466 1204 CDD WW 93 121 IPR001202 GO:0005515
Aip03g02466 1204 MobiDBLite consensus disorder prediction 347 413 - -
Aip03g02466 1204 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 559 733 IPR014001 -
Aip03g02466 1204 MobiDBLite consensus disorder prediction 119 138 - -
Aip03g02466 1204 MobiDBLite consensus disorder prediction 152 263 - -
Aip03g02466 1204 MobiDBLite consensus disorder prediction 122 136 - -
Aip03g02466 1204 MobiDBLite consensus disorder prediction 1092 1130 - -
Aip03g02466 1204 MobiDBLite consensus disorder prediction 903 945 - -
Aip03g02466 1204 MobiDBLite consensus disorder prediction 1135 1159 - -
Aip03g02466 1204 ProSitePatterns WW/rsp5/WWP domain signature. 96 122 IPR001202 GO:0005515
Aip03g02466 1204 Pfam WW domain 92 122 IPR001202 GO:0005515
Aip03g02466 1204 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 762 906 IPR001650 -
Aip03g02466 1204 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 366 998 - -
Aip03g02466 1204 SUPERFAMILY WW domain 84 122 IPR036020 GO:0005515
Aip03g02466 1204 Gene3D - 503 737 IPR027417 -
Aip03g02466 1204 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 528 556 IPR014014 GO:0003724
Aip03g02466 1204 MobiDBLite consensus disorder prediction 1026 1076 - -
Aip03g02466 1204 Pfam Helicase conserved C-terminal domain 759 867 IPR001650 -
Aip03g02466 1204 MobiDBLite consensus disorder prediction 1165 1184 - -
Aip03g02466 1204 CDD SF2_C_DEAD 747 876 - -
Aip03g02466 1204 MobiDBLite consensus disorder prediction 967 1204 - -
Aip03g02466 1204 MobiDBLite consensus disorder prediction 1077 1091 - -
Aip03g02466 1204 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 679 687 IPR000629 -
Aip03g02466 1204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 599 883 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02466 Aip-Chr3 41696508 41702549 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02466 516 905 Eukaryotic Initiation Factors Gene Family AT3G19760 34.351 1.38e-67 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02466 K12823 - gmx:100807830 1292.33