Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02461 ATGATTTCAGGATGGAACTCAAGTGCAGCTAATGCCACTAAGTTCCAGAAATATCTCGCCGCAGAAAATGGAGGAGGAGCTGATCTTGTTGCCAACTGTACTTCAGCTTCAGCTTCAGGTTGGGAAACATTCAAGCTATGGAGGGTCAGTGACACACCCTTCAATTTTAGAGTATTTAACAAGCAATTTCTTGGGATGGAAAATCAAGGTGGATATGATAAAGAAGATAAAGCAGCTAGAGCTTATGATTTGGCTGCATTGAAGTATTGGGAAACATCCACTACTACCAACTTTCCTATCGGCAACTATGAGAAGGAATTGGATGAAATGAAACACATGACAAGACAAGAATTTGTAGCCGCCATAAGAAGGAAAAGTAGTAGTTTCTCGAGAGGTGCATCAATGCATCACCAACATGGGAGATGGCAAGCAAGAATTGGAAGGGTCATCGGAAACAAAGATCTTTACTTAGGAACATTTAGTACGGAAGAAGAGGCTGCAGAAGCTTATGACATAGCAGCCATCAAGTTCAGAGGCCTTAAGGCCGTTACAAACTTCGACATGAGCCGTTATGTCAACAAATTTAGCATATGGGACAAGTCAAGCATGGATATAAAATATGCAAGTAGATTGACATCTTGTTGA 645 0.4109 MISGWNSSAANATKFQKYLAAENGGGADLVANCTSASASGWETFKLWRVSDTPFNFRVFNKQFLGMENQGGYDKEDKAARAYDLAALKYWETSTTTNFPIGNYEKELDEMKHMTRQEFVAAIRRKSSSFSRGASMHHQHGRWQARIGRVIGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLKAVTNFDMSRYVNKFSIWDKSSMDIKYASRLTSC 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02461 214 SUPERFAMILY DNA-binding domain 69 100 IPR016177 GO:0003677
Aip03g02461 214 ProSiteProfiles AP2/ERF domain profile. 129 187 IPR001471 GO:0003700|GO:0006355
Aip03g02461 214 Gene3D AP2/ERF domain 61 101 IPR036955 GO:0003700|GO:0006355
Aip03g02461 214 Gene3D AP2/ERF domain 130 189 IPR036955 GO:0003700|GO:0006355
Aip03g02461 214 Pfam AP2 domain 136 179 IPR001471 GO:0003700|GO:0006355
Aip03g02461 214 CDD AP2 131 189 IPR001471 GO:0003700|GO:0006355
Aip03g02461 214 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 69 202 - -
Aip03g02461 214 SMART rav1_2 131 193 IPR001471 GO:0003700|GO:0006355
Aip03g02461 214 SMART rav1_2 55 105 IPR001471 GO:0003700|GO:0006355
Aip03g02461 214 SUPERFAMILY Actin-crosslinking proteins 16 70 IPR008999 -
Aip03g02461 214 ProSiteProfiles AP2/ERF domain profile. 70 99 IPR001471 GO:0003700|GO:0006355
Aip03g02461 214 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 69 202 - -
Aip03g02461 214 SUPERFAMILY DNA-binding domain 129 189 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02461 Aip-Chr3 41555104 41558212 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02461 70 191 AP2-EREBP Transcription Factor Family AT5G57390 85.156 6.81e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip03g02461 AP2 5.3e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02461 K09285 - gmx:100788471 224.942