Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02459 ATGCTCGGGAAAAAAACATATAACTTGCCAGGAACATACAAGATCCAACACAATAATAATTTCCCTGCTCCCTCAATCCCCCCTATATGCAGTCGGTTGTTCTTCTTGGATGGTTTCTACAATAACGTCAGAAACAACCAACAAGCAAGCTCTTCTTTGGGGAGTGTGGCGCAACAACTCTTTAATCAGTTCAGGACTTTAAGATTTGATGCAAATGATGACCGTATTCCTGGACTAGCTTTTAGGAACAACCGTCCGTACCTAGAGGTGCAGCAACCGGAACTTCTCAGACTCGCATGGACTCAAATACAAAAACAATTCTTTCAGACTGCTGTATTCATGGGGTGCAACAAAGGGGAAATTGAGCTTGGTTTCTTAAATATGTCTCAGGCTGAAATTCAAACAGCACTTAGCAGTTTGTTCCAGGAAGATTTCTCTTCTGGTCGGCAAATAATGGATCATCAGAATAATCCACCCTCATCATCTTCATCTTCTTTGAGATCATTATCTACAACAGCTGGCAGCCCTGAATACTCCTCTCTCCTATTCAACATTCCTCCGGCCGGAACACTCGGAACCGGGGGAGTCACCACTGGCGGAGCCACCGCGGGAGCAATAGTACCTAACACAATGTCTCCTTTGTCATCCAACACACAATCAGCATTGCTAACTAATTACGTATTCCCGAGTCATCACCAGGAGATCGAAAACGAGACACTAATGAGAGTGTTCCTGAACGCTATATCACCACAACAGCATCAAAACTTGCCTTATAACATCACTGTGGTGCACCCTGAGGGTAGCGCTTTCAAGAGGTACAGGACGGAACCGGAACCGGGACCGGAACGGGGGCCGGAGAGTTTGCGGAGTAGGCAAAGCCTTATGAAGAGATCGTTAGCGTTCTTTAGGAGCATCAATGCTATGAGAATAAGGGAACGGATTCAAGCCACTCGCCCCTCTAGCACACAGCTTCATCATATGATAGCTGAGAGAAGAAGGCGCGAGAAGCTCAACGATAATTTTCAGGCTCTTAGAGCATTGCTTCCTCCCGGAACTAAGAAAGACAAAGCGTCTATACTAACAACTGCAAAGGAGACACTGAGTTCATTGATGGCGGAAATTGAAAAGCTGAGGATAAGAAATCACGAGTTAGAATCACGTTTGCCTGAAAGCAGCAAAGAATCAAGCGCTACCGATCAAGAAATTAGCAAAACTATGTTATTGGTGCCACCAAACGAGAGATTTCATGTTCAAATTTCAGATGTGCCACAATCATCATCATCATCATCGTCAGAAGAGAGAAGGGTGGATTTGCATGTGGCTTTGAGGGGGCAAATTTCTCAGATTGATGCGGTGATTCGGTTATTGGAGTTCTTGAAACTGGCTCAGAATGTGAGCTTGGTTACCATGACAACAAATACCAATAATGTTGGTCAAGGGAATAATAATTATATTAATCAACTAACATTCAGATTAAGGATTCTTGAGGGAAGTGAATGGGATGTTTCTGCCTTCCAGGAAGCAGTGAAAAGAGTTGTAGATCCCAGAACTCCAGAAGCCAGAAGAGAAGAAGAATCACTGAAAAAGCAGTTCACCACCCACAGTTCCACCGCCATCGCCACCGCATCCCGCAACGACAGCAGCGACGGCGTTGACCACGGCAACCACCACCGCGTCCTGTTTCGTCGCCGAACTCGCCCCCTGTTGCGTTGTCGCCGAGCTCGCCTCCTGTTGCGTCGTCGCCGAGCTCGCCTCCTCTTCCGTCGTCGCCGTTACTCGCCGCCGatggaacaatcacaaagtaacccacagccacaagataatgctgAGAAGTGA 1836 0.4553 MLGKKTYNLPGTYKIQHNNNFPAPSIPPICSRLFFLDGFYNNVRNNQQASSSLGSVAQQLFNQFRTLRFDANDDRIPGLAFRNNRPYLEVQQPELLRLAWTQIQKQFFQTAVFMGCNKGEIELGFLNMSQAEIQTALSSLFQEDFSSGRQIMDHQNNPPSSSSSSLRSLSTTAGSPEYSSLLFNIPPAGTLGTGGVTTGGATAGAIVPNTMSPLSSNTQSALLTNYVFPSHHQEIENETLMRVFLNAISPQQHQNLPYNITVVHPEGSAFKRYRTEPEPGPERGPESLRSRQSLMKRSLAFFRSINAMRIRERIQATRPSSTQLHHMIAERRRREKLNDNFQALRALLPPGTKKDKASILTTAKETLSSLMAEIEKLRIRNHELESRLPESSKESSATDQEISKTMLLVPPNERFHVQISDVPQSSSSSSSEERRVDLHVALRGQISQIDAVIRLLEFLKLAQNVSLVTMTTNTNNVGQGNNNYINQLTFRLRILEGSEWDVSAFQEAVKRVVDPRTPEARREEESLKKQFTTHSSTAIATASRNDSSDGVDHGNHHRVLFRRRTRPLLRCRRARLLLRRRRARLLFRRRRYSPPMEQSQSNPQPQDNAEK 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02459 611 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 321 392 IPR036638 GO:0046983
Aip03g02459 611 MobiDBLite consensus disorder prediction 150 172 - -
Aip03g02459 611 MobiDBLite consensus disorder prediction 589 611 - -
Aip03g02459 611 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 29 514 - -
Aip03g02459 611 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 29 514 IPR044658 -
Aip03g02459 611 Pfam Helix-loop-helix DNA-binding domain 325 370 IPR011598 GO:0046983
Aip03g02459 611 MobiDBLite consensus disorder prediction 531 548 - -
Aip03g02459 611 SMART finulus 327 376 IPR011598 GO:0046983
Aip03g02459 611 Coils Coil 360 394 - -
Aip03g02459 611 MobiDBLite consensus disorder prediction 594 611 - -
Aip03g02459 611 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 321 370 IPR011598 GO:0046983
Aip03g02459 611 MobiDBLite consensus disorder prediction 516 554 - -
Aip03g02459 611 MobiDBLite consensus disorder prediction 272 291 - -
Aip03g02459 611 CDD bHLH_AtbHLH_like 326 378 IPR045239 -
Aip03g02459 611 MobiDBLite consensus disorder prediction 516 530 - -
Aip03g02459 611 Gene3D - 320 395 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02459 Aip-Chr3 41359546 41370782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02459 12 513 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 36.735 4.06e-79 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip03g02459 HLH 6.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02459 - - ahf:112790359 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03366 01 136756193 136759630 Aip03g02459 03 41359546 41370782 PCT