Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02452 ATGGAGGTGAACTTAAGCGAGGGGGATGCTGATTGTCGACGGACTCAAAGTGATGCATACGAGGAGTTCATCGGTGCCGAAGAAGGAGGATCCGTGGCCGACGATGAATGTTGTGACTTTGAAGACCTGGGCGCACTGAGTGTGGATGACATTTTGAAGAAGGTTTGGGTCAGCGTTGAGATTGCATATGAGTTCTATCGGAGGGTTGACAGAAGAAGGGAACACAAACCAGAGACAAGAACTAACTGCAAGGCAATGTTATCGGTTTTTTTAGACAAAAATGATAACTACTGGAAGGTGAGTAAGCTAGTCACCGAGCACAACCACGAGTTGACACCGGTAGGAATGGTGCACTTGATTGCAAATCATCGTGGGTTAACGGAAACAGCAAAGAGTCAGATAGATGGGATGCAAGCACATGGTATTGCAACGGCAAAGATTGTAGGGTACATGGCTGGTATGGCCGGTGGCTATTCGTTGTTGGGGTTTTTGAAAAAGGATGTCTACAACTACACTGACAAACAATGGCGCATTAAAATATCTGACGGTGACGCAAATTCTGCAATAGTGTATCTTGAGGGAAAAGCCGAGTTAGATCCCATGGCAATTGCAAAATACAATGTGACTTGTGACAAAAGGCTAGCCAATCTGATTTGGGCAGACGGATCCAACAGAGTCGATTACCAATACTTTGTTTATGTATTGGCCTTTGATTCAACATACAAGAAAAACAAATACAAGAGACCGGTCGTGATTTTTTTTGGATCAAACAATCACAAGCAGACCATCATCTTTGGATTTGGGTTGTTGCTTGATGAAAGTATTGATTCCTATCGGTGGATGTTGGAGCATTTGATGGAGATCATGTGTGGTAAGAAGCCGGCTGTAGTTGTGACTGACGGTGACAAGGCTATGATAAAACCAGTTTTCAAAGTGCTTCCCTCTGCGACCCATTGTTTGTGTGCATGGCATGTGGAGAAAAACGTCACATCTAATGTAAAGGATACAGAATTACGTGGGTTGTTTAGAAGATGGCTGTATACAGAAATGACGACAGAGGACTTCGAATCCAAATGGGAGGATGCTGCCCATGTGTATGGGCTACGTGAGAAGCAATGGTCATGCCAGATGTGCGAAGGCATTAATGCACACGTGAACAAGTTTTCGAAGTCCACCCACACAATTTACGAGCTTGTTCAGAGCTTGGAGATGGTTTTCCGCGAGTATCGGAATAGGGAGTTGCTCCTCCAGTTTCAGTCTATCAACTTGGTTCCGGTTATGACAACATGCCTGAGAAATATTGAAAGGCATACCGCTACGGTATACACAAGAGAAGTGTTTGGGGACATCAAGAAGGAGATCGAAGGGGTAGGTTCCTTGAACCAGATTAACAAAAGAAGGATATTGAATACAATGGTATACACCCTTGAGGAATATGAGAAACCAAATGTGCAGATAACGACGTCATTCGATCGGTCGACTAGCAAAGTAAGTTGTCAATGTAACTTCTGGAAGAAGCATGGATATCCATGCAAGCACATGTTCTTTGTGATGAAGGCAGAGCACTTGAAGGAGATACCCGATAAGCTCATTCTCAGGAGGTGGAGAACTGATGCAAAATCTCCTGAATAG 1632 0.4406 MEVNLSEGDADCRRTQSDAYEEFIGAEEGGSVADDECCDFEDLGALSVDDILKKVWVSVEIAYEFYRRVDRRREHKPETRTNCKAMLSVFLDKNDNYWKVSKLVTEHNHELTPVGMVHLIANHRGLTETAKSQIDGMQAHGIATAKIVGYMAGMAGGYSLLGFLKKDVYNYTDKQWRIKISDGDANSAIVYLEGKAELDPMAIAKYNVTCDKRLANLIWADGSNRVDYQYFVYVLAFDSTYKKNKYKRPVVIFFGSNNHKQTIIFGFGLLLDESIDSYRWMLEHLMEIMCGKKPAVVVTDGDKAMIKPVFKVLPSATHCLCAWHVEKNVTSNVKDTELRGLFRRWLYTEMTTEDFESKWEDAAHVYGLREKQWSCQMCEGINAHVNKFSKSTHTIYELVQSLEMVFREYRNRELLLQFQSINLVPVMTTCLRNIERHTATVYTREVFGDIKKEIEGVGSLNQINKRRILNTMVYTLEEYEKPNVQITTSFDRSTSKVSCQCNFWKKHGYPCKHMFFVMKAEHLKEIPDKLILRRWRTDAKSPE 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02452 543 PANTHER OS02G0262500 PROTEIN 63 541 - -
Aip03g02452 543 Pfam SWIM zinc finger 496 514 IPR007527 GO:0008270
Aip03g02452 543 Pfam FAR1 DNA-binding domain 70 112 IPR004330 -
Aip03g02452 543 Pfam MULE transposase domain 234 328 IPR018289 -
Aip03g02452 543 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 63 541 IPR031052 GO:0006355
Aip03g02452 543 ProSiteProfiles Zinc finger SWIM-type profile. 484 522 IPR007527 GO:0008270
Aip03g02452 543 SMART 26again6 497 524 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02452 Aip-Chr3 40843322 40845155 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip03g02452 MULE 1.1e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02452 - - adu:107457771 776.163