Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02442 ATGATGATACCAAGTCATCATCCTATTCCTTTTGATCTCAATGAAGAACATCACCTCTTCACTACTACTACATATCCTCAACTTTCTTCTCCTTCTTCTTCTTTATCATCTTATTCTTATTTGGACCAACATCCAAACCATTTACAAATAACTCATCAACAGGCTGAGAAGATTCATGTTCCTTCTAGTGGAGGATCATGGGATCATATTCATGACCACAGAAAAGAAGAAGAAGAAGAAGAGAAGGATGGAAACAAAAAGAGTAGTAAACTGCTCAAGTTGAAAATTTTGAAGAAAGAAGAAAGGAATGAAAATCAAGCTCATGATGATGAGGAGGACCATGGTTCGGTGAAGTGGATGTCTTCAAAGATGAGGATCATGGGTGGTTCTGATACTAATAATTTCAGGTTAAGGTTTGATGAAGAGGGACCAAAGCAGCAACCGTCGCTATCCCCTTTAGGAACTGATAATAGCAGCAGCAACAGTAACAACAACAACTCTTCTTCAAACCGTCATGAAAATAATAATAATATGATTGTTAGGGTTTGTTCTGATTGCCACACCACAAAGACCCCTCTTTGGAGAAGTGGACCAAGAGGCCCCAAGTCTCTTTGCAATGCTTGTGGAATTAGACAAAGGAAGGCGAGGAGAGCTGCCGCGGCGGCGGCGGCGGCGGAGGTTGCAGCATCAGAGAACGATACAACTCTCATGGCTTCTACTGATGATGATGATGGATCTCTTCATGGTATGAAGAAGAAGGAAAAGAAGTTACACAAGCACAACAACAAAGATAAGAAGTTGAAAGCCAAGTGTAGTGCACCAAATCAGTTGAAAAAGAAGCACAAAATTGGAACCAATAACAATAAATTATCTCATAGAGGAAGAAAGAAGGTTGGTTTTGAAGACCTGACAATAAGTTTGAGCAAGAACTTGGCTTTAAATGTGTTCCCTCATGATGAGAAAGAGGCTGCAATCTTGCTCATGGCCTTATCCTATGGTTTACTTCATGGATTTCCCTCAGATCGTTACTTAGATTAA 1038 0.4008 MMIPSHHPIPFDLNEEHHLFTTTTYPQLSSPSSSLSSYSYLDQHPNHLQITHQQAEKIHVPSSGGSWDHIHDHRKEEEEEEKDGNKKSSKLLKLKILKKEERNENQAHDDEEDHGSVKWMSSKMRIMGGSDTNNFRLRFDEEGPKQQPSLSPLGTDNSSSNSNNNNSSSNRHENNNNMIVRVCSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAAAAAAAEVAASENDTTLMASTDDDDGSLHGMKKKEKKLHKHNNKDKKLKAKCSAPNQLKKKHKIGTNNNKLSHRGRKKVGFEDLTISLSKNLALNVFPHDEKEAAILLMALSYGLLHGFPSDRYLD 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02442 345 Coils Coil 250 270 - -
Aip03g02442 345 MobiDBLite consensus disorder prediction 57 118 - -
Aip03g02442 345 MobiDBLite consensus disorder prediction 148 176 - -
Aip03g02442 345 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 4 337 - -
Aip03g02442 345 Pfam GATA zinc finger 183 216 IPR000679 GO:0006355|GO:0043565
Aip03g02442 345 ProSitePatterns GATA-type zinc finger domain. 183 208 IPR000679 GO:0006355|GO:0043565
Aip03g02442 345 MobiDBLite consensus disorder prediction 66 118 - -
Aip03g02442 345 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 180 217 - -
Aip03g02442 345 CDD ZnF_GATA 182 210 IPR000679 GO:0006355|GO:0043565
Aip03g02442 345 Coils Coil 91 111 - -
Aip03g02442 345 SMART GATA_3 177 228 IPR000679 GO:0006355|GO:0043565
Aip03g02442 345 ProSiteProfiles GATA-type zinc finger domain profile. 181 213 IPR000679 GO:0006355|GO:0043565
Aip03g02442 345 Gene3D - 179 222 IPR013088 GO:0006355|GO:0008270
Aip03g02442 345 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 4 337 - -
Aip03g02442 345 MobiDBLite consensus disorder prediction 142 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02442 Aip-Chr3 39994596 39996789 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02442 92 337 C2C2-Gata Transcription Factor Family AT4G26150 38.610 6.93e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aip03g02442 GATA 3.8e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02442 - - adu:107478822 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g03349 01 136569167 136570610 Aip03g02442 03 39994596 39996789 PCT