Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02416 ATGGCAGTGGATCTGGTAGGAGTTCCACGGATGAGGATGGAACAACAAGAACAAGTTGCAATTCAAGAAGCTGCTTCGGCTGGCTTGAAGAGCATGGAGCATCTCATTCGCCTCCTCTCTTCTCAATCTCAATCTCATTCTCCTTCTACTTCCTCTTCCCCTCTCCCGAACAATAATAACAACCTCAACTGCTCCCAACTAACCGACTTCACAGTTTCCAAGTTCAAGCAAGTCATCAACCTCCTTAACCGCACTGGCCACGCCCGCTTCCGCCGCGCACCACCACAACAACAGCCCAACCCTACCCCTCAGGCCCAGCCTGGAACCACCACCGCCTTCACGCTAGATTTCCACAAACCCACCATTCTGAACTCCAAGCCCGCCGTCAACAAGGATGTCGACCAAGAAATGGAACTTAGTATTTCCCCTCCTGTTTCCACAACCACCTCCTCCACCTTCATGTCCTCCATCACCGGCGATGCTAGCGTCTCCGACGGCAAGATTGGCCCCTTCCTTACCCTTCCAGCTCCGCCTCCCGCTCCCGTTGCCTCCGGAAAACCTCCTCTCTCTTCTTCTCACCGGAAAAGGTGCCATGACGCAACCCTCTCCGGAAAAGCCTCCTCCTCCGCTCACTGCCATTGCTCCAAGAGAAGGAAATCACGTGTGAAACGAACGATCCGTGTGCCGGCTATAAGTTCGAAGATCGCCGATATACCGCCTGACGAATTCTCGTGGAGAAAGTACGGTCAGAAACCGATCAAGGGCTCACCTTACCCTCGTGGTTACTATAAGTGCAGCACCGTGAGAGGATGTCCGGCCAGGAAGCATGTGGAGAGAGCACAAGACGATCCGAAGATGCTAATAGTGACGTACGAAGGGGAACACCGTCACAATCCCCAGCCACACTCGCCGGAAACTGCCGGCACTCCCGCCGTCACCTCTGCTGGTGGTTTTAGCCTCCGGTCGTGTTGA 972 0.5453 MAVDLVGVPRMRMEQQEQVAIQEAASAGLKSMEHLIRLLSSQSQSHSPSTSSSPLPNNNNNLNCSQLTDFTVSKFKQVINLLNRTGHARFRRAPPQQQPNPTPQAQPGTTTAFTLDFHKPTILNSKPAVNKDVDQEMELSISPPVSTTTSSTFMSSITGDASVSDGKIGPFLTLPAPPPAPVASGKPPLSSSHRKRCHDATLSGKASSSAHCHCSKRRKSRVKRTIRVPAISSKIADIPPDEFSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAQDDPKMLIVTYEGEHRHNPQPHSPETAGTPAVTSAGGFSLRSC 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02416 323 Pfam Plant zinc cluster domain 194 237 IPR018872 -
Aip03g02416 323 MobiDBLite consensus disorder prediction 295 323 - -
Aip03g02416 323 Gene3D WRKY domain 227 300 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip03g02416 323 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 16 301 - -
Aip03g02416 323 SMART WRKY_cls 239 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip03g02416 323 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 301 IPR044810 GO:0003700
Aip03g02416 323 Pfam WRKY DNA -binding domain 241 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip03g02416 323 ProSiteProfiles WRKY domain profile. 234 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip03g02416 323 MobiDBLite consensus disorder prediction 90 110 - -
Aip03g02416 323 SUPERFAMILY WRKY DNA-binding domain 237 299 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip03g02416 323 MobiDBLite consensus disorder prediction 40 60 - -
Aip03g02416 323 MobiDBLite consensus disorder prediction 302 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02416 Aip-Chr3 39262324 39264412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02416 1 298 WRKY Transcription Factor Family AT2G24570 51.385 1.76e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aip03g02416 WRKY 4.9e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02416 - - gmx:732587 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g02416 03 39262324 39264412 Aip03g02416 03 39262324 39264412 ECH
Aip01g03337 01 136478664 136480103 Aip03g02416 03 39262324 39264412 PCT