Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02406 ATGCCTCTTTTCTATGAAGTTCTTTCAGGTGTTATACTGAAGAAGGAAGACGAGCAAGAAAGAAGAAACAAGAGTGCCACAGTTACAAATCCTATAAACAATAAAAGGCAACACAAGCTACTTTGTCTTTTTTATCCGCAAGCAGCACTGGTGCTTAATGCTTCTCGTCGATTTCGTTACACCTTGGACTTGAAAAAACAAGAAGAGAAGACACAAATATTGAGAAAGATTAGAGCTCATGCACAAGCCATTAGGGCAGCATATCTTTTCAAAGCAGCCGGGGATGGTCAAGTGATTGAAACCACAAAGCCTCCTGCGGCCTCTGCTGGTGAATTTCCAATTGGACAAGAGCAACTTGCTTCAGTTTCAAGGGAGCATGATACCGTTGCTCTTCAGCAATATGGAGGGGTTGCTGGGATATCAAATTTGTTGAAAACCAATTTAGAGAAGGGGATTCATGGTGATGATGCTGACTTACTAAAACGAAGGAATGCATTTGGTTCCAATGATTATCCTCGAAAGAAAGGAAGAAGTTTCTGGATGTTTATGTGGGATGCTTGCAAGGATCTGACTTTGATTATTTTAATGGTAGCTGCAGCGGCTTCATTGGCATTGGGGATAAAATCTGAGGGTATTGAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTCATTGTTGTCACCGCTATAAGTGACTATAAGCAGTCTCTTCAGTTTCGGAACCTGAATGAAGAGAAGAGAAATATCCATTTGGAGGTTATCAGAGGTGGTAGAAGGATTGAAATCTCTATATATGAGATTGTTGTTGGTGATGTTATACCCCTCAATATTGGTAACCAGGTCCCTGCTGATGGAATTTTGATCACTGGTCACTCTCTGGCAATTGATGAATCAAGTATGACTGGGGAGAGCAAAATTGTCCATAAAGATTCTAAGGACCCTTTTTTGATGTCTGGGTGTAAAGTTGCAGATGGCAGTGGTACTATGCTGGTAACTGGTGTTGGTGTTAATACTGAATGGGGGCTTCTAATGGCCAGCATTTCAGAAGACACTGGTGAAGAAACACCTTTGCAGGTTCGCTTAAATGGTGTAGCCACCTTCATCGGTATTGTTGGTCTCTCTGTTGCTGTTGTTGTTCTGATTGTGCTACTGGCCAGATTTTTCTCCGGCCATACCAGAGATGCAAGTGGCAATGTTCAATTTAAAGCAGGGAAGACTAAAGTTGGTGATGCTATTGACGGGGCAATTAAGATAGTAACTGTTGCGGTCACTATTGTAGTGGTTGCAGTACCAGAAGGGCTCCCGTTAGCAGTTACCTTAACACTGGCGTACTCAATGAGGAAAATGATGGCGGATAAAGCTTTGGTGAGGAGGCTTTCCGCTTGTGAGACAATGGGCTCTGCAACAACCATTTGCAGTGATAAGACTGGCACGTTGACCATGAATCAGATGACTGTGGTTGAGGCTTATGCTGGTGGGAAGAAGAATGATCCTCCTGGTAACAAGTCAGAGCTCTCTCCCAAGCTCCACTCTTTGCTCATTGAAGGTGTTGCACAGAACACTAATGGCAGTGTTTATGTCCCTGAGGGTGGTAACGATGTTGAGGTTTCCGGATCACCAACAGAAAAGGCAATTTTACATTGGGGATTAGAGATTGGGATGAACTTCGACTCTACTAGATCGGAATCATCAATTATTCACGTTTTCCCTTTCAATTCTGAGAAAAAACGAGGCGGAGTTGCAGTACAAACGGCTGACTCTGAAGTTCACATACACTGGAAAGGTGCTGCTGAGATTGTCCTAGCCTGCTGTACACGGTACATTGATGCAAATGACCAGTTGGTAGACATGGATGAGGAAAAGATGGTATCTTTCAGAAAAGCTATTGAAGACATGGCTGCCGAGAGTTTACGTTGTGTTGCCATTGCATATAGAACATTTGAAAAGGAGAATGTTCCAGCCACTGAAGAAGAACGGGCTCACTGGTCTTTACCAGAAGATAATCTTGTTTTGTTAGCTATTGTTGGTCTGAAGGATCCTTGTCGACCTGGAGTCAAAGATTCAGTGGAGCTTTGCCAAAAATCTGGGGTTAAGGTAAAAATGGTCACTGGTGACAATGTCAAAACTGCAAAAGCAATTGCTGTGGAGTGTGGAATACTTAATTCCCTTGCTGAAGCTACAGAGCCAATCATCATTGAAGGAAAAACTTTTCGTGCCATGACAGATGCACAGAGAGATGAAATAGCTGAAGCAATATCAGTTATGGGACGGTCATCTCCTAATGACAAATTATTGCTTGTGCAAGCATTGAGGAGGAAGGGACATGTTGTGGCTGTAACTGGGGATGGAACAAATGATGCTCCTGCACTACATGAGGCTGATATAGGTCTTGCAATGGGTATTCAAGGAACTGAAGTTGCAAAAGAAAGCTCTGATATTATTATTTTGGATGACAATTTTGCTTCAGTTGTAAAGGTTGTGAGATGGGGACGTTCTGTGTATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTAAATGTAGCAGCTCTTGTTATAAATGTTGTTGCTGCTGTTTCCTCTGGTGATGTCCCACTGAATGCAGTGCAGCTTTTGTGGGTAAATCTTATCATGGATACTTTGGGAGCACTAGCATTGGCAACTGAACCACCAACTGATCACCTTATGGATCGGCCTCCAGTGGGCCGAAGAGAACCTCTCATAACAAATATTATGTGGAGAAATTTACTGATACAGGCAATGTACCAAGTATCTGTGTTGCTTGTTCTGAATTTCCGAGGTAGGAGCATACTGGGTCTGACACATGACAAAAATGATCATGCAATTAAAGTGAAAAACACTCTGATCTTCAATGCATTTGTTCTGTCTCAAATCTTTAATGAGTTCAATGCACGAAAGCCAGATGAGTTTAACATATTCAGTGGAGTCACGAAAAACTACCTCTTCATGGGTATAGTGGGATTAACTGTTGTGCTTCAGATCATCATCATCGAATTCCTCGGCAAGTTCACTTCAACAGTCAGGCTTAATTGGAAGCAGTGGCTGATCTCTGTCATCATTGGGTTCATAAGTTGGCCTCTTGCTGTGGTTGGTAAATTGATACCAGTTCCAGATACTCCCATCAACAACGTATTTTCAAGATTTCGGGGTCGAAGAAAGGAACCTGAG 3207 0.4241 MPLFYEVLSGVILKKEDEQERRNKSATVTNPINNKRQHKLLCLFYPQAALVLNASRRFRYTLDLKKQEEKTQILRKIRAHAQAIRAAYLFKAAGDGQVIETTKPPAASAGEFPIGQEQLASVSREHDTVALQQYGGVAGISNLLKTNLEKGIHGDDADLLKRRNAFGSNDYPRKKGRSFWMFMWDACKDLTLIILMVAAAASLALGIKSEGIEEGWYDGGSIAFAVILVIVVTAISDYKQSLQFRNLNEEKRNIHLEVIRGGRRIEISIYEIVVGDVIPLNIGNQVPADGILITGHSLAIDESSMTGESKIVHKDSKDPFLMSGCKVADGSGTMLVTGVGVNTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVAVVVLIVLLARFFSGHTRDASGNVQFKAGKTKVGDAIDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEAYAGGKKNDPPGNKSELSPKLHSLLIEGVAQNTNGSVYVPEGGNDVEVSGSPTEKAILHWGLEIGMNFDSTRSESSIIHVFPFNSEKKRGGVAVQTADSEVHIHWKGAAEIVLACCTRYIDANDQLVDMDEEKMVSFRKAIEDMAAESLRCVAIAYRTFEKENVPATEEERAHWSLPEDNLVLLAIVGLKDPCRPGVKDSVELCQKSGVKVKMVTGDNVKTAKAIAVECGILNSLAEATEPIIIEGKTFRAMTDAQRDEIAEAISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRPPVGRREPLITNIMWRNLLIQAMYQVSVLLVLNFRGRSILGLTHDKNDHAIKVKNTLIFNAFVLSQIFNEFNARKPDEFNIFSGVTKNYLFMGIVGLTVVLQIIIIEFLGKFTSTVRLNWKQWLISVIIGFISWPLAVVGKLIPVPDTPINNVFSRFRGRRKEPE 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02406 1069 PRINTS P-type cation-transporting ATPase superfamily signature 809 821 - -
Aip03g02406 1069 PRINTS P-type cation-transporting ATPase superfamily signature 785 804 - -
Aip03g02406 1069 PRINTS P-type cation-transporting ATPase superfamily signature 700 710 - -
Aip03g02406 1069 PRINTS P-type cation-transporting ATPase superfamily signature 477 491 - -
Aip03g02406 1069 PRINTS P-type cation-transporting ATPase superfamily signature 301 315 - -
Aip03g02406 1069 PRINTS P-type cation-transporting ATPase superfamily signature 678 689 - -
Aip03g02406 1069 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 124 1049 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Aip03g02406 1069 Gene3D - 185 1038 - -
Aip03g02406 1069 SFLD p-type atpase 459 837 IPR044492 -
Aip03g02406 1069 PANTHER CATION TRANSPORTING ATPASE 44 1061 - -
Aip03g02406 1069 SFLD Haloacid Dehalogenase 459 837 - -
Aip03g02406 1069 Pfam Cation transporting ATPase, C-terminus 870 1047 IPR006068 -
Aip03g02406 1069 Pfam Cation transporter/ATPase, N-terminus 135 202 IPR004014 -
Aip03g02406 1069 SUPERFAMILY Calcium ATPase, transmembrane domain M 134 1049 IPR023298 -
Aip03g02406 1069 Gene3D - 158 353 - -
Aip03g02406 1069 Pfam haloacid dehalogenase-like hydrolase 474 799 - -
Aip03g02406 1069 SUPERFAMILY HAD-like 475 890 IPR036412 -
Aip03g02406 1069 SUPERFAMILY Calcium ATPase, transduction domain A 255 350 IPR008250 -
Aip03g02406 1069 Gene3D - 474 830 IPR023214 -
Aip03g02406 1069 ProSitePatterns E1-E2 ATPases phosphorylation site. 479 485 IPR018303 -
Aip03g02406 1069 PRINTS Sodium/potassium-transporting ATPase signature 596 614 - -
Aip03g02406 1069 PRINTS Sodium/potassium-transporting ATPase signature 220 240 - -
Aip03g02406 1069 PRINTS Sodium/potassium-transporting ATPase signature 470 491 - -
Aip03g02406 1069 Gene3D - 487 685 IPR023299 GO:0000166
Aip03g02406 1069 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 484 682 IPR023299 GO:0000166
Aip03g02406 1069 CDD P-type_ATPase_Ca_PMCA-like 159 918 - -
Aip03g02406 1069 Pfam E1-E2 ATPase 255 455 - -
Aip03g02406 1069 PANTHER CALCIUM-TRANSPORTING ATPASE 44 1061 - -
Aip03g02406 1069 Gene3D - 45 92 - -
Aip03g02406 1069 SMART Cation_ATPase_N_a_2 133 207 IPR004014 -
Aip03g02406 1069 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 752 865 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aip03g02406 1069 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 418 500 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02406 Aip-Chr3 38819568 38833936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02406 45 1066 Primary Pumps ATPases AT5G57110 75.610 0.0 1579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02406 K01537 - gmx:100792945 1756.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g02406 03 38819568 38833936 Aip03g02406 03 38819568 38833936 ECH
Aip01g03333 01 136448668 136460565 Aip03g02406 03 38819568 38833936 PCT