Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02405 ATGCATATGAAAGGAATACGCTCAGCAGGAGGCTTTTATGTCGATCCTGAAGCTAAACTCTTATTCATCATCAGGATCCGTGGTATCAATGCTATGCACCCTAAGATAAGGAAGATTTTGCAGCTCTTGCGGTTGAGGCAGATCTTTAATGGTGTATTCCTCAAGGTTAACAAAGCAACCATGAATATGCTGCACAGGGTAGAGCCGTATGTTACATACGGGTATCCCAATCTGAAGAGTGTTAGAGAATTAATTTACAAGAGAGGCTATGGAAAAGTTGATAAGCAGAGAATTGCTTTGACAGACAACTCCATCATTGAACAGACATTGGGGAAGCACGGAATTATATGCGTTGAAGATCTGATCCACGAGATAATGACAGTTGGTCCTCACTTCAGAGAAGCAAACAACTTCCTATGGCCCTTCAAATTGAAGGCTCCATTGGGTGGTTTGAAGAAGAAAAGGAATCATTATGTCAGAAGGAGGTGA 489 0.4172 MHMKGIRSAGGFYVDPEAKLLFIIRIRGINAMHPKIRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKVDKQRIALTDNSIIEQTLGKHGIICVEDLIHEIMTVGPHFREANNFLWPFKLKAPLGGLKKKRNHYVRRR 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02405 162 PANTHER 60S RIBOSOMAL PROTEIN L7 6 159 IPR039699 -
Aip03g02405 162 TIGRFAM uL30_euk: 60S ribosomal protein uL30 7 159 IPR005998 GO:0000463|GO:0003735|GO:0022625
Aip03g02405 162 Gene3D - 20 126 IPR036919 -
Aip03g02405 162 CDD Ribosomal_L7_archeal_euk 20 160 IPR035808 -
Aip03g02405 162 Pfam Ribosomal protein L30p/L7e 21 71 IPR016082 -
Aip03g02405 162 SUPERFAMILY Ribosomal protein L30p/L7e 20 160 IPR036919 -
Aip03g02405 162 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 6 159 - -
Aip03g02405 162 ProSitePatterns Ribosomal protein L30 signature. 39 71 IPR018038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02405 Aip-Chr3 38677742 38680206 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02405 10 159 Cytoplasmic Ribosomal Protein Gene Family AT2G44120 90.000 1.27e-100 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02405 K02937 - sind:105161667 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g02405 03 38677742 38680206 Aip03g02405 03 38677742 38680206 ECH