Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02393 ATGGAGAAGCTCTTTTCATTGAACTGTTGCATTGGTTACATTCTTATTGTTTACTCTCTCTTTGCATGTGTGCATGGCAAAGAACAATTGTCATGCAATCAAACACCATACCCAAATGTTTGCAAGCATTACGTTGAGACAGCTACAAATACATTATTCTCAGAAACATCATCGACCCAAGATGAACATGTTTCTTCACCTTCTTATTCGTTCCACGGCATGGCCCTTAAGGTCACCATGGACCAAGCCATTAGAGCCCATGAACTAGTCTCAACCATGGACCCTAAAAACTTCAAAGAAAACAAAAAAGCCAAGATGGCTTGGGAAGATTGTTTGGAGCTCTATGAGGACACCATTTATCAGCTGAACCGTTCAATGAAATCGAAAAACCTAAACGACAAGTTAACATGGCAAAGTGCTTCCATTGCAAACCACCAAACATGCCAAAACGGTTTCATTGAATTCAACTTGAATTCTCACCTAAACTTGTTCCCAACCATGCTGTCCAACTTCTCCAAATTGCTCAGCAACTCCTTGTCCATCACCAAGGCCGTGTCCATGTTAGAAGCGGAGCAAGAAGTCAGAGGAAGGAGGAGGTTATTGCTTTCATCATCATCAAATCATAACAAACACGGACATGGCTTCCCTGAATGGCTATCGGTTTCCGATAGGAGGCTTCTTCAGGCGGCGACACCACCAAAGGGTGACGTGGTGGTGGCGCAAGACGGGAGTGGGAACTACAAGACGATAACGGAGGGAGTGGCGGCCGCCGCTAGGATTGGGGGAGGAAGGAGGGTTGTGGTGCACGTGAAAGCAGGAGTTTACAAAGAGAATGTTGATATCAAGAAGACAGTGAAGAACATAATGATAGTTGGAGATGGAATTGACGCTACCGTTGTCACTGCTGACGGTAACGCACAAGATGGATCCACCACTTTCCGTTCAGCTACATTTGGGGTTTCCGGTGACGGGTTCATAGCGCGGGACATAACCTTTGAGAACACGGCGGGTCCACAGAAGCACCAGGCCGTAGCTCTCCGGTCTGGCTCCGACCACTCCGTCTTCTACCGCTGCAGCTTCAAGGGCTACCAAGACACCTTATACGCCTACGCCCAGCGCCAATTCTACCGCGACTGCGACGTGTACGGCACCGTGGACTTCATCTTCGGCGACGCCGCCTGCGTCCTCCAAAACTGCAACATCTACGTCCGAAGACCCATGGGCAACCAGGACATCACCGTCACCGCCCAAGGTAGAACCGATCCCAACGAGAACACCGGCATCGTGATCCACAACAGCCGCATAACTGCTGCCGGCGACATGAGATCCGTTCAGGGCTCCTTCAAGACCTTCCTCGGGCGTCCATGGCAGAAGTACTCAAGAACCGTGATCATGAAGAGCGGCCTAGACGGCTTGATTAACTCGGCCGGTTGGAAACCATGGAGTGGAAGCTTTGCTCTCAGCACACTCTATTATGGTGAGTACATGAACACTGGTCCTGGTGCTAACACTGCTGGTAGGGTTCACTGGCCTGGCTTTCATGTTATTAGTAGTCCCTCTGAGGCTGTCAAGTTTTCTGTTGGTGATTTCTTGGCTGGTGGTTCATGGATTCCCGGCACTGGTGTCCCCTTTGATGCAGGTTTGTAA 1647 0.4954 MEKLFSLNCCIGYILIVYSLFACVHGKEQLSCNQTPYPNVCKHYVETATNTLFSETSSTQDEHVSSPSYSFHGMALKVTMDQAIRAHELVSTMDPKNFKENKKAKMAWEDCLELYEDTIYQLNRSMKSKNLNDKLTWQSASIANHQTCQNGFIEFNLNSHLNLFPTMLSNFSKLLSNSLSITKAVSMLEAEQEVRGRRRLLLSSSSNHNKHGHGFPEWLSVSDRRLLQAATPPKGDVVVAQDGSGNYKTITEGVAAAARIGGGRRVVVHVKAGVYKENVDIKKTVKNIMIVGDGIDATVVTADGNAQDGSTTFRSATFGVSGDGFIARDITFENTAGPQKHQAVALRSGSDHSVFYRCSFKGYQDTLYAYAQRQFYRDCDVYGTVDFIFGDAACVLQNCNIYVRRPMGNQDITVTAQGRTDPNENTGIVIHNSRITAAGDMRSVQGSFKTFLGRPWQKYSRTVIMKSGLDGLINSAGWKPWSGSFALSTLYYGEYMNTGPGANTAGRVHWPGFHVISSPSEAVKFSVGDFLAGGSWIPGTGVPFDAGL 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02393 548 Pfam Pectinesterase 236 533 IPR000070 GO:0030599|GO:0042545
Aip03g02393 548 ProSitePatterns Pectinesterase signature 1. 262 281 IPR018040 -
Aip03g02393 548 TIGRFAM PME_inhib: pectinesterase inhibitor domain 31 184 IPR006501 GO:0004857
Aip03g02393 548 SUPERFAMILY Pectin lyase-like 230 547 IPR011050 -
Aip03g02393 548 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 23 547 - -
Aip03g02393 548 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 185 IPR035513 -
Aip03g02393 548 PANTHER PECTINESTERASE 23 547 - -
Aip03g02393 548 ProSitePatterns Pectinesterase signature 2. 381 390 IPR033131 -
Aip03g02393 548 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 184 IPR035513 -
Aip03g02393 548 SMART PMEI_2 25 181 IPR006501 GO:0004857
Aip03g02393 548 Gene3D - 232 548 IPR012334 -
Aip03g02393 548 CDD PMEI-like_3 30 186 - -
Aip03g02393 548 Pfam Plant invertase/pectin methylesterase inhibitor 31 181 IPR006501 GO:0004857
Aip03g02393 548 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02393 Aip-Chr3 38115162 38118108 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02393 10 548 Carbohydrate Esterase AT1G23200 49.912 0.0 531