Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02392 ATGAGTAACACCATTCTTGTTTTCTTTTTCTTCTTCTTTATAACTCTGCAGCAATCCTACTCTGAAAACAATGACACCTCATACTCCATTTGCAGCAAACCATTCAGCTGCGGAACACGCATCACCAACGCATCGTACCCTTTCTGGGGAGGGAACAGACCCCAGTTTTGTGGAACCAATGGTTTCAAACTCACCTGCACCAACAACACTACTTCACTTCAAATTGGTTTGCAAAAGTTCCATGTACTTGCCATAAACCAAACTCAGAGTACCATGAGACTCGTCAGAACAGACTTTGTCTATGATCGCTGTTCTTCCAACCTCACCAACACTTCTCTCAATGGAAGTCCCTTTCATTTTCTCCCAAACACTCTTCACAATATCACTATATTCTACGATTGTCCATCTGGGAGTCATTACACCAACAATTTTACGTGCCAGAATGATAGCAGCAAACGTGGTTTCTATGCTGTCAATGGAACTCAGGCTCAGCAGTTTCGGAACTGTGGGGTTAGTGTTCAAGTGCAAGTTTCAGGTTCTGTAGGGAATAATCTCAAGGGAGCATTGGATGAAGGGTTTGATGTTCAGTATGATGCAGACTTGTCTTCAAAGTGCAAAACATGCACGGAATCTGGAGGAGTATGTGGCACCAATAACGAAACTGATTCCTCTCAGTTTTCATGTTATTGCCCCACTGGAACTCATGCTTCTGCTTGTTCTTCTCATAAAAGTAGTTCGAAGCACAAAGTCTTGAAGCTAGTTTTAGGTTTCCTAGGAACTGGAATTGGACTACCTCTGATTGCTGTGATCATATGCCGCAATAAAGCTAAGGTGTGGAAGTTCATAAAGAATCAATTAGGATTGATGAATAAGCATGATCGAAATATAGAAGCCTTTCTAGAAAGCCAAGGTCCACTTGGTATAAAAAGATATAATTTCTCTGACGTGAAGAAAATGACCAACTCCTTCAAAGTCAAACTCGGAGAAGGAGGTTATGGTTCTGTTTACAAGGGAAAATTACCCAATGGTTCCTCTGTGGCTGTAAAGATGCTCAATGACTCCAAAAGGAATAACGGCGAAGAATTCGTCAATGAAGTTGCCAGCATTAGCAAAACATCTCATGTTAATGTTGTCACTCTTGTCGGATTTTGCCTCGAAGGAAGCAGAAAAGCTCTCGTCTATGAATTCATGCCTAATGGTTCTCTCGAAAAATTTGTTCACAAAAAGGCCGATCAAAGCACTCCGGCCCTGAGTTGGGACAAGTTGTACCAGATTGCAATCGGAATAGCTAAAGGATTGGAGTACTTGCACAAAGGATGCAACACTAAGATTGTGCATTTTGATATTAAGCCTCATAATATTCTTTTGGACGAAAATTATCGTCCAAAAATATCAGATTTTGGACTAGCTAAACTCGGCACAAAGGATGAGAGCATTATGTCAATGTCATATGCTAGAGGCACAGTTGGATATGTGGCTCCGGAGATGTGCAACAAGAGTTTCGGAGGTGTATCTCATAAATCTGATGTTTATAGCTACGGAATGATGCTGCTAGAAATGGTTGGAGGGCAGAAGAATGCGAATGTTGAAGCGAGTCGCTCGAGCGAGATATACTTTCCACAATTGGTGATTTACAAGAAGCTTGAGGTTGGGAGTGATTTGGGGCTTGATGGGGTGATGAGCACAGAAGAAAATGAGTTGGCGAAGAAAATGATTATGGTGGGTTTGTGGTGCATTCAGACAATTCCCTCTCAAAGACCAACCATAAGCAGAGTGATTGACATGTTGGAAGGTAGCATGGAGTCTATGGAAATGCCACCAAAACCAACTATGTCATCTCCTCCAAGATCCGCAACAGACTTTTCCACTGCATCATTGTCAGGGGATAGTTGTTGA 1896 0.4193 MSNTILVFFFFFFITLQQSYSENNDTSYSICSKPFSCGTRITNASYPFWGGNRPQFCGTNGFKLTCTNNTTSLQIGLQKFHVLAINQTQSTMRLVRTDFVYDRCSSNLTNTSLNGSPFHFLPNTLHNITIFYDCPSGSHYTNNFTCQNDSSKRGFYAVNGTQAQQFRNCGVSVQVQVSGSVGNNLKGALDEGFDVQYDADLSSKCKTCTESGGVCGTNNETDSSQFSCYCPTGTHASACSSHKSSSKHKVLKLVLGFLGTGIGLPLIAVIICRNKAKVWKFIKNQLGLMNKHDRNIEAFLESQGPLGIKRYNFSDVKKMTNSFKVKLGEGGYGSVYKGKLPNGSSVAVKMLNDSKRNNGEEFVNEVASISKTSHVNVVTLVGFCLEGSRKALVYEFMPNGSLEKFVHKKADQSTPALSWDKLYQIAIGIAKGLEYLHKGCNTKIVHFDIKPHNILLDENYRPKISDFGLAKLGTKDESIMSMSYARGTVGYVAPEMCNKSFGGVSHKSDVYSYGMMLLEMVGGQKNANVEASRSSEIYFPQLVIYKKLEVGSDLGLDGVMSTEENELAKKMIMVGLWCIQTIPSQRPTISRVIDMLEGSMESMEMPPKPTMSSPPRSATDFSTASLSGDSC 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02392 631 Pfam Wall-associated receptor kinase galacturonan-binding 31 96 IPR025287 GO:0030247
Aip03g02392 631 PANTHER RUST RESISTANCE KINASE LR10-RELATED 3 627 IPR045874 GO:0004672
Aip03g02392 631 SMART serkin_6 321 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g02392 631 Pfam Wall-associated receptor kinase C-terminal 155 232 IPR032872 -
Aip03g02392 631 MobiDBLite consensus disorder prediction 614 631 - -
Aip03g02392 631 MobiDBLite consensus disorder prediction 602 631 - -
Aip03g02392 631 ProSitePatterns Protein kinases ATP-binding region signature. 327 349 IPR017441 GO:0005524
Aip03g02392 631 CDD STKc_IRAK 327 598 - -
Aip03g02392 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Aip03g02392 631 Gene3D Transferase(Phosphotransferase) domain 1 397 609 - -
Aip03g02392 631 Pfam Protein kinase domain 324 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g02392 631 Gene3D Phosphorylase Kinase; domain 1 297 396 - -
Aip03g02392 631 ProSiteProfiles Protein kinase domain profile. 321 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g02392 631 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, PROTEIN KINASE RLK-PELLE-LRK10L-2 FAMILY-RELATED 3 627 - -
Aip03g02392 631 SUPERFAMILY Protein kinase-like (PK-like) 302 597 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02392 Aip-Chr3 38010363 38013916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02392 31 611 Receptor kinase-like Gene Family AT5G38260 41.244 2.35e-143 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Aip03g02392 Pkinase 3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02392 - - gmx:100816285 889.412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g03072 05 133801311 133804123 Aip03g02392 03 38010363 38013916 PCT