Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02371 atggagattagGGTCTTCTCCGAACTTGTGAACAAGAGCCGTATTGCTGAAGAATGTGTGAGGAAGGCTGTTGAGGCGAAGAATGACCGTCAGGAGTCCCACCGCAGGGAGCACAATCAAGAATACCCAACAAGGGTTCAAGAGTTTAAGAGAAGAGGATACCCACAACGTTTTCCCCAAAGGCGAAATGACCTTGCGACGAATAAGAattcccaaggaaaagAGATTGCCCACATCGGAAGGACCGGGAGACTGCCAGGTCTGATTTTCATACCTGAGGTATTTCCTTTGCTTATTGAGAAGTTCTCTCTCGAGGAGCAGGCATCTTTAGTTTGGCAGTTTCTTTGCAGTATTCCTGTGAACATGATGACAGAATTTCTTCCATGGCTTTCAAGATCCATATCACCTGATGAACGACTGGATTTGCAGAATTGCTTAATCAAGATAGTGCCAGAGGAAAAGCTTCTTCAAAAGCTAAGTGAGATAGCAGTGGAGACCAGAAAGATACAAAGTTCAGGGGATTTTACAAATCTATCCTCTTTTAATCAAAGATTGCAGTTCATTGCTGAAGTTTGTATATTTCATAGTATTGCTGAGGACAAAGTTATTTTTCCAGCAGTAGATGGAGAATTGTCATTTTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTTCGAGACATTTCCGTAATGAAGAAGTTCAGGTCCTTCCACTTGCAAGAAAGCACTTTAGCTTTAAAAGGCAATGCGAACTTCTTTCCAGAAATGGATTCTGCTATAGTTACACTCTTCTCTGGGTGGGCTTGCAAGGCTCGTATTGAAGGTCTATGTTTGTCTTCTGGTGCTTCAGGCTGCTGTCCTGTTCAAAGACTTTCTGATACAGAAGAAAACATTGCTTGGCCATTCTGTGCTTGTGCTTCCGCATCATCTCCAAGTCCTTGCGGTCCTTGTCTTTCAACTCTTCTGCCCCATCTCTTAATTCCAGTCTTTTTTGTATGGGAAACAGAAAGCAGCTCATCTGATGTTGGATCTGCACAAAGACCAATTGATACCATATTTAGTTTCCACAAAGCTATACGAAAAGATTTGGAGTATCTAGATGTTGAATCTGGAAAGCTGAGTAATGGTGATGAGATAGTTCTTCGGCAATTTAGTGGAAGATTTCGTCTTTTATGGGGTTTATATAGAGCTCATAGTAATTCAGAAGATGATATAGTATTTCCAGCATTGGAGTCAAAAGAGGCACTTCATAATGTGAGTCATTCATACATGTTGGACCATAAGCAGGAAGAACAATTATTTGAGGATATTTCCTGTGTTCTTTCTGAGCTTTCTATGCTTCACGAAGCCTTGCAGATGAACCATATGCTAGAGAACTTAAGTGAAAGTAATTTTAGAACTTCTGATTCCAAGGGTAGTGAGAATATTAAAAAGTATAATGAACTCGCAACTAAGCTTCAAGGAATGTGCAAATCCATAAGGGTTACTCTGGATCATCATCTTTTCAGGGAGGAGTGTGAACTGTGGCCATTATTTGGGAAACATTTCACTGTAGAAGAACAGGACAAGATAGTGGGACGGATAATTGGAACAACTGGAGCCGAAGTTCTCCAATCAATGTTGCCATGGGTAACTTCCGCGCTTACTCAAGATGAACAGAACAAAATGATGGACACATGGAAGCAGGCAACTAAAAACACTATGTTCAATGAATGGCTCACTGAATGCTGGAAAGATAGTCCAGCACCTATAACACAGATAGAAACTTCAGATCATAACACTTCTCGAAGAGGTGCTGAATATCAAGAAAGCTTGGACCATAATGATCAAATGTTCAAGCCTGGTTGGAAAGACATATTCCGGATGAACCAGAATGAACTTGAGTCAGAGATCCGAAAGGTTTATCGTGATTCAACTCTTGATCCAAGGAGAAAGGCATACCTTGTGCAGAATCTGATGACAAGTCATTGGATAGCTGCTCAGCAGAAATCACTGAAAGCCATAACTGAAcggagatgtcatatacttgacccgctacacaagaaagctccaagcgaagagagaaagcagcttaataaatttactggatatgtattttcaagattgagagcatatgccggtggggaacctctgaagaaagacgagaaggagaaggaaattaaagcatcatatgttaaaatatcaggccaaaaatcaaggaaaggaagtgaggatagtgaaggtgagaatcTCCTCAGATGTAACTCAGAAATTGGAGCAATCGGTCACGAGACTCAGAGTTGTTCTAATACTCAAGAAGGTGGTAATAAAGATGATAGCCTAGAAGATCTCCTCAAAGAGATTGGTAAGTTGGATTGTAAGATAACTGGAGTGCCCATAGAGAAAAATCATAGAATTGGAAATGATGAGAAAAGCCCAAAGGTGGAGAAGGCACAGTACCAGAGGCTTGTGGGAAAACTCATCTACTTATCACACACCAGGCCTGACATAGCCTATGCAGTTAGTGTGGTTAGTCAATTCATGCATGATCCAAGAGAGAGACATTTGCAGGCTGTAAACAGAATTATTCAGTACTTGAAAGCCTCTCCAAAGAAAGGATTGCTATTCAAAAAGGAAGGGATTTTATCCATGAAAGTATATACTGATGCTGACTACGCTGGATTAATTATTGCTAGGAGATCCACCTCAGGATATTGCATGTTCTTGGGTGGAAACTTGGTGACATGGAGGAGCAAGAAGCAAAATGTAGTTGCAAGATCAAGTGCAGAGGTGGAATTTAGAGCCATGGCCCAAGGGATTTGCGAATTATTATGGATGAAGATCATACTTGATGACCTCAAAGTAAAGTATGAAGCTCCTATGGAACTGGTTTGTGATAATAAGTCTGCCATTAGTATTGCACACAATCCAGTTCAACATGACCGAACAAAGCATGTAGAAATAGACCGACATTTCATTAAGGAGAAATTGGACAATGGTCTTATAGCCACCAAGTACATTCCTTCAAGACTCCAATTGGCAGATATGTTCACTAAGAGACTTCCCACAGAGCATTTAAAAGACCTTACTTGCAAGCTGGGAATGATAGATATACATTCACCAGCTTGA 3114 0.3754 MEIRVFSELVNKSRIAEECVRKAVEAKNDRQESHRREHNQEYPTRVQEFKRRGYPQRFPQRRNDLATNKNSQGKEIAHIGRTGRLPGLIFIPEVFPLLIEKFSLEEQASLVWQFLCSIPVNMMTEFLPWLSRSISPDERLDLQNCLIKIVPEEKLLQKLSEIAVETRKIQSSGDFTNLSSFNQRLQFIAEVCIFHSIAEDKVIFPAVDGELSFFQEHAEEESQFNDFRDISVMKKFRSFHLQESTLALKGNANFFPEMDSAIVTLFSGWACKARIEGLCLSSGASGCCPVQRLSDTEENIAWPFCACASASSPSPCGPCLSTLLPHLLIPVFFVWETESSSSDVGSAQRPIDTIFSFHKAIRKDLEYLDVESGKLSNGDEIVLRQFSGRFRLLWGLYRAHSNSEDDIVFPALESKEALHNVSHSYMLDHKQEEQLFEDISCVLSELSMLHEALQMNHMLENLSESNFRTSDSKGSENIKKYNELATKLQGMCKSIRVTLDHHLFREECELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLTECWKDSPAPITQIETSDHNTSRRGAEYQESLDHNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSHWIAAQQKSLKAITERRCHILDPLHKKAPSEERKQLNKFTGYVFSRLRAYAGGEPLKKDEKEKEIKASYVKISGQKSRKGSEDSEGENLLRCNSEIGAIGHETQSCSNTQEGGNKDDSLEDLLKEIGKLDCKITGVPIEKNHRIGNDEKSPKVEKAQYQRLVGKLIYLSHTRPDIAYAVSVVSQFMHDPRERHLQAVNRIIQYLKASPKKGLLFKKEGILSMKVYTDADYAGLIIARRSTSGYCMFLGGNLVTWRSKKQNVVARSSAEVEFRAMAQGICELLWMKIILDDLKVKYEAPMELVCDNKSAISIAHNPVQHDRTKHVEIDRHFIKEKLDNGLIATKYIPSRLQLADMFTKRLPTEHLKDLTCKLGMIDIHSPA 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02371 1037 Coils Coil 21 41 - -
Aip03g02371 1037 CDD RNase_HI_RT_Ty1 880 1019 - -
Aip03g02371 1037 Gene3D nmb1532 protein domain like 346 577 - -
Aip03g02371 1037 SUPERFAMILY DNA/RNA polymerases 806 983 IPR043502 -
Aip03g02371 1037 Pfam Hemerythrin HHE cation binding domain 350 512 IPR012312 -
Aip03g02371 1037 CDD Hr-like 352 512 - -
Aip03g02371 1037 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 237 318 - -
Aip03g02371 1037 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 158 230 - -
Aip03g02371 1037 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 93 159 - -
Aip03g02371 1037 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 331 671 - -
Aip03g02371 1037 PANTHER CHY ZINC FINGER PROTEIN 237 318 - -
Aip03g02371 1037 PANTHER CHY ZINC FINGER PROTEIN 158 230 - -
Aip03g02371 1037 PANTHER CHY ZINC FINGER PROTEIN 93 159 - -
Aip03g02371 1037 PANTHER CHY ZINC FINGER PROTEIN 331 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02371 Aip-Chr3 37752005 37775716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02371 332 665 C2H2 Transcription Factor Family AT3G18290 69.162 1.78e-153 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02371 K16276 - gmx:100803002 642.499