Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02342 ATGATGAGAAACAATGTGCTGCAGCAGCAGCAGTTCAAAGATTCAGCTCTTAAGATGATCTCATTGTGCTCCCTAATTATTGTAGGTGTAGTTGAAACAAAATCAACAATAGAACCATGCAACTCCTCCCAGGCATGCCCCTCACTTCTCTCATACCTCTTGCCATGGGACTCAATGCTATCCGAAATAGCAACACGCTTCAACGTGAACGTCTCTGATATCATGGCCGCAAACTCTGCCTTCCCAATAACAGCATCGTGCGGCAACGAAATCGTGAGAGCAGGATCAACGGTGAAGATACCAGCCACGTGTGAGTGCGTGGATGGAATCAGAAGGTCGGTGTCAGCAGTGTACAAGGTGAAAGCATCGGACACACTGGAATCGATATCAGAGGGTTATGGAGGACTTGTTAGTGCAGATCAAATTGGGAGTTTCAACAAAGCCGTGCCTTTGGTGGATGGAGATGTGGTAGTTATACCGTTGCCGTGCAGTTGCATGAAGAACCAGAATAATGGGGAAAGTGCGGTTTATATGTCGTATGTGGTTCAGAAAGGGGAGACACTGGGAAGCGTGGCGGCTTATTTTGGTACAACTATTTCTGATTTGGAAACTGTTAACGGTCTTGGACAACCTACCGTTCTACCTGGCGATATTCTATCGATTCCTATACCAGCATGTTCATCAGCTACCCTGAATTGGTACAATGAGAGTTTAATAGTTCCAAATGGCTCATATGCTTTAACTGCCACCAACTGTATTAAATGCACTTGTGCTCCACAGGGTCTCAAGATGCAATGTTTTCCTTCTGGAATGGATGTACATTGCTATAATTTACGTTGCAAGGGTTCCAATCTTGCTATTGGGGATGAACATCTGGAATATTCCAATGCTGGATGCAATGTCACCCAATGTGTGTACCGTGGCCACAGGGGTGGAAAAATTCTGAGTAGTCTGATAAACTCTTCTTATCTGCAATGTCCGGATAATAAAAACTCTAGTGCAGCTACATGTTGGCAACCCTCAGCACCAAATTTGGCAGACCCATTTGTTTTGTCTCCAAGCCCAAGCCCAAGCCTATTCCCCTTGCCCGTTTCTGAGGCTGCTCTAATGACTCATGCCTATGACTATGACTACGACTATGAGAGAAGGCTCCATCTGTTCTCATTCATCTGTCGCATGAAAGACGCAGCTGCAACTGCAACAAGTGCAAGTGCCTTGGGTGCCAAGACGGCCAGGGCTTGCGACAGCTGCTTACGGAGGAGGGCACGGTGGTTCTGCGCTGCAGATGATGCATTCCTCTGCCATGCCTGTGACAACTTGGTCCACTCCGCGAACCAGTTAGCGAGCAGGCACGAGAGGGTTAGGCTTCAAACGGCGTCGTGCAAGCTCACCAACAAGGTAACCACCGCACACGCATGGCACAGTGGGTTCACGCGCAAGGCAAGAACACCGCGCCACAACAACAACAAGCACTTAGCCTTGCAACAAAGGCTTAAGGACCAAGTTTTATTCAACACCGCTTGTGTTCTTCCCGTTGTGCCGGAGCTTGGAGTTGAAGAAACAGCTCTTCTGGATGATCATGAGAGCGAGGAGCAGCTGCTGTGTCGCGTCCCCGTGTTTGACCCTTTCGATGCAGAGCTTTGCAATGATGTGTACAGTGAAGTCAGGGACGAGAAGAATCACGAAGAACGAGGTTGTTGTGATGACTTGGAGAGCTTCTCTGAGTTTCTGCCATCGGATATGGATCTTGCTGAGTTTGCTGCTGATGTCGAAAACCTGCTTGGAAGTGGGATTGATGAGGATTCATTAGGAATTGATTGCAAAGAAGAAGTTCAAAGAGAAGATGCATGCGTTAGAGCCGAAACCACCATTAATATTAAGGAGGGTGCAATGGTAATGGTAAAGGTGAAGGATGAGGAGCTTGATTCAGATACAGCAAGTCATCTTCAGTCAGTTTTTGACATCACAAACGATGACGAATTTGATTGGAATATCGAATCGGTGCTCTTATCGACGGAGGAAAAGGCGACCGCTGCCGCACCAGTAAGTAATAATAGTGATAGTGTTAGTGAAGAGAAAAAGAGGGACATATTTTTGAGACTGAACTATGAAGAGGTTATAAATGCTTGGGCAAGCCAAGGTTCTCCGTGGACAACAGGAACCCCTCCTCCGTTCAACCCTCATGATCATTCCTGGCCAAATTTCTTGGATCCAAGTGGCGGAGATGTTCATCAGTGCTCTTCTTATGGGGATGGGAGAAGCGTGAGGGGACATGTTGGAGATGGGGGAAGAGAAGCAAGAGTATCTAGGTACAGAGAGAAGAGAAGGACTCGTTTGTTTGCTAAAAAGATAAGATATGAAGTGAGGAAACTGAATGCGGAGAAGAGACCTAGAATGAAAGGTAGATTTGTCAAGAGATCATGCCTTGTTGGAGGAGCCACAACTTCCTTTCAAACCTCCTATAACTGA 2469 0.4682 MMRNNVLQQQQFKDSALKMISLCSLIIVGVVETKSTIEPCNSSQACPSLLSYLLPWDSMLSEIATRFNVNVSDIMAANSAFPITASCGNEIVRAGSTVKIPATCECVDGIRRSVSAVYKVKASDTLESISEGYGGLVSADQIGSFNKAVPLVDGDVVVIPLPCSCMKNQNNGESAVYMSYVVQKGETLGSVAAYFGTTISDLETVNGLGQPTVLPGDILSIPIPACSSATLNWYNESLIVPNGSYALTATNCIKCTCAPQGLKMQCFPSGMDVHCYNLRCKGSNLAIGDEHLEYSNAGCNVTQCVYRGHRGGKILSSLINSSYLQCPDNKNSSAATCWQPSAPNLADPFVLSPSPSPSLFPLPVSEAALMTHAYDYDYDYERRLHLFSFICRMKDAAATATSASALGAKTARACDSCLRRRARWFCAADDAFLCHACDNLVHSANQLASRHERVRLQTASCKLTNKVTTAHAWHSGFTRKARTPRHNNNKHLALQQRLKDQVLFNTACVLPVVPELGVEETALLDDHESEEQLLCRVPVFDPFDAELCNDVYSEVRDEKNHEERGCCDDLESFSEFLPSDMDLAEFAADVENLLGSGIDEDSLGIDCKEEVQREDACVRAETTINIKEGAMVMVKVKDEELDSDTASHLQSVFDITNDDEFDWNIESVLLSTEEKATAAAPVSNNSDSVSEEKKRDIFLRLNYEEVINAWASQGSPWTTGTPPPFNPHDHSWPNFLDPSGGDVHQCSSYGDGRSVRGHVGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRSCLVGGATTSFQTSYN 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02342 822 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 401 812 - -
Aip03g02342 822 CDD LysM 55 100 IPR018392 -
Aip03g02342 822 ProSiteProfiles Zinc finger B-box type profile. 409 456 IPR000315 GO:0008270
Aip03g02342 822 CDD Bbox1_BBX-like 413 456 - -
Aip03g02342 822 Pfam LysM domain 60 101 IPR018392 -
Aip03g02342 822 Pfam LysM domain 180 222 IPR018392 -
Aip03g02342 822 ProSiteProfiles CCT domain profile. 764 806 IPR010402 GO:0005515
Aip03g02342 822 Pfam B-box zinc finger 411 454 IPR000315 GO:0008270
Aip03g02342 822 SUPERFAMILY LysM domain 178 223 IPR036779 -
Aip03g02342 822 SMART LysM_2 117 160 IPR018392 -
Aip03g02342 822 SMART LysM_2 60 101 IPR018392 -
Aip03g02342 822 SMART LysM_2 179 222 IPR018392 -
Aip03g02342 822 Gene3D LysM domain 164 232 IPR036779 -
Aip03g02342 822 ProSiteProfiles LysM domain profile. 178 221 IPR018392 -
Aip03g02342 822 CDD LysM 117 159 IPR018392 -
Aip03g02342 822 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 401 812 - -
Aip03g02342 822 CDD LysM 179 221 IPR018392 -
Aip03g02342 822 Pfam CCT motif 764 806 IPR010402 GO:0005515
Aip03g02342 822 SMART bboxneu5 409 456 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02342 Aip-Chr3 36931130 36937026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02342 403 806 C2C2-CO-like Transcription Factor Family AT1G25440 44.836 3.94e-98 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Aip03g02342 zf-B_box 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02342 - - adu:107478728 845.884