Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02281 ATGACTACCACAACCACCACCACTTCCTCGTCTCATATTCTCCGCCACACCTCCGACTTCATTTCCGGCGTCCTCTCTCAATCGGAGCTCCGGCGACATCTCGCCGCGACCCTCCGCCGCGAGACTACACCACTCTGCAGCCAAACCACCCTCAGACAGCTCAGCCTCGCCTCCGACACCATTGAAAACGCCATCTCCTCCTCCAGCACCTCCATCCGAACCTCTTCCCTCACCCTCGCCGAGAAGCTCCTCCTCCCTCTCCCCGAACTCCCCCTCTCCTCCTTCCTCCTCTCTCTTCTCCTATTCCTCTCGAACCGCCACGTGGATTCCGCCGTACTCCTCCTCCAAATCTTCCACTCCAATCCATCCCTGGCCAGATCCGAAATCGCTCCGGTTCTCTACGATCACCTCTTCTCCCTCCACCTGCTCCCTGTTTTCCGGTGGTTCGATGAGCACAGAACGCGGATTTTGTCCGAATCGAGCAGTGATGCGAGTGATTATTCAATTACGGAGGAGTCAGTGGTGCTGCCGTGCACCAAATTGTTGTCGAGGATGAGTGAGAATCAGGCTTCGAAGCTGAGGGAGTTGGAGAGAGAGTACCAGGAGGCTATCGACCAAAATTGCAGGGTTGTTGCTGTGTATTTCAAGGAGGTTTTGACCAGTAAAAGCAGTGAAGCGTCGATTAGTCCACCGCTGTTGACTCTGAAGAGCACAGAAGATGTTGACGGAGGGAAGAACAAAGAGGAGATTCAAGAATCCCAAATGTCTGTGTTGGAGAATGGACGGTATAATCCAATATGGTCCGAAAGGGAGACATCTATTGAATTCTTGAGCAGCACCTCCAGCAGCAAATCTTCACATATAAATTATTATCCTCAAAGAGTCTCTCCCAGAATCCTCAAACGCCAAAAATCTTCAAAAGATTCAGCACCAGATGACGACAAAAATGTGGCATTGTTGGAGCCTCGACAAAGCCAGTCCCATGAACAAATGCAACCTAACTTGAAAGAATTCAGAGGCTCCCCAGAGTATCATATGGCAGAGTATGATAATCCGCCGCCTGGAACTGCAAAAAATACGCCTCCTAAGGACTTTGTCTGTCCGATAACTAGTAACATATTTGATGATCCTGTGACTCTTGAGACAGGACAAACATATGAACGTAAAGCTATCGAGGAATGGTTCAAAACTGGCAACTCAACTTGTCCAATCACTCGCCAGAAGCTGCAAAACACGCAGTTACCTAAGACAAACTATGTGCTCAAACGACTAATTGCAAGCTGGAAAGAACACAACCCTAATTCAGTTCCACCGTCATGTGAGAGTCCATATGAAGAAAGCAAGGCTGTAACGAAGACAATAAAGGTTTCAACTCTGCCTAAAGATGTCGTAAAACAAGCCACGGTGGATGGGATCATTAGTGAGTTGCGCTATGCAATCAATAATCTCTATATGTCAGATATTCTTGAGGAATCTGAAATGGCTGTGCTTCATATTGAAAAGCTTTGGAGAGAAGTGAATTTAGGAGTGGATATCCATAGCATGCTATCAAAACCTCCAATAATTAATGGGTTTATGGAGATCCTTTTCAATTCTGTTCAGCCCCGGGTGCTACGAGCGGCAGTGTTCCTTCTGGCCGAAACCGGTTCTAGAGACCACTCTGTTATTCAGACGCTTACGCGTGTGGACACTGACGTAGAATGTATCATGGCACTTTTCAAGAAAGGGTTGACAGAAGCTGTTGTGCTGCTGTATCTGCTAAAACCTTCCACTACAAGTCTTGCTGAGATGGCCACACCGGAATCTCTCCTAGCAGCATTCAATAAAGAAGAGGAAAACTTGGTTCCAATATGTTTGAAGCCCAAAACAGCTGCCTTGCTTTTATTCGCACAGGTTATTGGAAGTAGTGAAGAAAGAATTGCGTCGTCAGCTGCCAAGTGTGTGTTCTCTGAAAAAGCAATCGGAAATATTGTCGCCAGTTTAGAAGCTGAGTGGGCAGAGGAGAGGATTGCTGCAGTGGAGATCTTATTAAGATGCATGCAAGAGGATGGGACTTGCCGGAACACCATTGCTGAAAAGGCAGACTTGTCTCCTATTTTGGAAAGTTTCACTGGTGCAACTGATGTAGAGTGTTTAAAGATTGTCCAATTTTTCTCTGAATTAATAAAGTTAAATAGGAGGACATTGAATGAACAAATCCTCCGCTTTATAAAGGAAGAAGGACCTTTTAGTACAATGCATACACTGCTCATTTGTCTGCAGACAGGCCTTCAAGACCAATGTCCTGTCATGGCCGGCCTTTTACTCCAACTTGATCTTCTGGTAGAGCCAAGAAAGATGAGCATATACCGTGAAGAGGCAATTGATACTCTCATTTCATGCCTGAGAAACACAGATTTCCCTGCTGCTCAATTAGCAGCTGCTCATACAATCATGTCACTTCAAGGGAGGTTCGACTTCTCTGGAAAGTCTCTTACCAGAGAAGTCCTTCTTAAACGTGCAGGTGTTGACAGAAGTCCTGGATATCTTGAACAGGTGCTCCAGATCAACAGCTTCTACCCAGAAACTGAAATAACTCCTGAAGAAGAGAAAGCAGCGGATGATTGGGAAAGAAAAATTGCATCTGTTCTAGTCAGCCACGAGTTTGGTATACTTTTCGAGGCTTTAGCAGATGGCATAAATAGCCGAAATCCAGAACTACGGTCAGCATGCTTTATATCAGCTACGTGGCTAGTATACATGTTGACCATTCTACCGGACACAGGGGTACAAGGAGCAGCGCGTGTCTGCTTGCTGAAACAGTTCATAACAAAACTAAATTCTGCTAAGGACATTCATGATAGAGTCCTTTCTATGCTTGCTCTAAATAGTTTTCTCCATTTCCCTGATGGCTTTCACGATCTAACTTCCTACACTAAGGATATCTTAAAAGGTTTGAGAGAGCTTAAGAGAATCTCTCCATTGACATCTGAAATTCTTAAAGTTCTGGTTGAAGAGAATGAATCTAAAAGTGACATATGGATACATAAAGAGCTGATTCGAGTAGATTGCAGTGAGAATGGGGAAGTGCCATCTCTCATTTGTTTCAAGAATAAATTATTTTCGGGCCACTCTGATGGAACTATTAAGGTTTGGATGGTAAAGGATACTTCATTCCATCTCTTGCAAGAGATCCAAGAACATCTTAAGCCTGTAACAAGTTTGGTGATTTCAGAATCTGGTGACAGACTATACAGCGGTTCACTTGATCGAACTGCAAAGGTTTGGTCTATTGGAAAGGCAGCAATTCATTGTGTACAAGTTCATGATATGAAGGAGCAGATTCATAATTTAATTGTAACTGACAGCATATCTTGTTTCACTGCACAGGGCGCTGGTGTCAAGGTTCAATCATGGAATGGAGAATCAAAATTGTTAAATTCTAATAAATACGTTAAGTGCTTGGCTCATGTTCATGGGCGATTATACTGCGGCTGCCACGATAGCAGTGTTCAGGAGATAAATCTGGACACCGGAAACGTCAGTACTATTCAAAGTGGTTCTAAAAAACTACTTGGCAAAGCCTATCCTATTCATGCACTGCAACTTCATGGTGAACTTATATATGCAGCTGGCTCTTCCTTAGATGGATCTGTTATAAAGATGTGGGACAATTCTAGTTATAGATTGGTGGGATCTCTGCAAACCGGATTGGAAGTGCGGGCAATGGCTGTGAGCTCAGAATTAATTTACTTGGGGGGCAAGGGGGTAGCTGTGGAAATCTGGGATAAGACGAAACACAACAAACTTGACACATTACAAACGGCCACAAACAGTAGGGTTCTTTGCATGTCTCTAGACAGGAATGAAGAAATTTTGGTAATTGGAACTTCTGATGGCCAAATTCAGGCATGGAGAGTAAATTAA 3906 0.4444 MTTTTTTTSSSHILRHTSDFISGVLSQSELRRHLAATLRRETTPLCSQTTLRQLSLASDTIENAISSSSTSIRTSSLTLAEKLLLPLPELPLSSFLLSLLLFLSNRHVDSAVLLLQIFHSNPSLARSEIAPVLYDHLFSLHLLPVFRWFDEHRTRILSESSSDASDYSITEESVVLPCTKLLSRMSENQASKLRELEREYQEAIDQNCRVVAVYFKEVLTSKSSEASISPPLLTLKSTEDVDGGKNKEEIQESQMSVLENGRYNPIWSERETSIEFLSSTSSSKSSHINYYPQRVSPRILKRQKSSKDSAPDDDKNVALLEPRQSQSHEQMQPNLKEFRGSPEYHMAEYDNPPPGTAKNTPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFKTGNSTCPITRQKLQNTQLPKTNYVLKRLIASWKEHNPNSVPPSCESPYEESKAVTKTIKVSTLPKDVVKQATVDGIISELRYAINNLYMSDILEESEMAVLHIEKLWREVNLGVDIHSMLSKPPIINGFMEILFNSVQPRVLRAAVFLLAETGSRDHSVIQTLTRVDTDVECIMALFKKGLTEAVVLLYLLKPSTTSLAEMATPESLLAAFNKEEENLVPICLKPKTAALLLFAQVIGSSEERIASSAAKCVFSEKAIGNIVASLEAEWAEERIAAVEILLRCMQEDGTCRNTIAEKADLSPILESFTGATDVECLKIVQFFSELIKLNRRTLNEQILRFIKEEGPFSTMHTLLICLQTGLQDQCPVMAGLLLQLDLLVEPRKMSIYREEAIDTLISCLRNTDFPAAQLAAAHTIMSLQGRFDFSGKSLTREVLLKRAGVDRSPGYLEQVLQINSFYPETEITPEEEKAADDWERKIASVLVSHEFGILFEALADGINSRNPELRSACFISATWLVYMLTILPDTGVQGAARVCLLKQFITKLNSAKDIHDRVLSMLALNSFLHFPDGFHDLTSYTKDILKGLRELKRISPLTSEILKVLVEENESKSDIWIHKELIRVDCSENGEVPSLICFKNKLFSGHSDGTIKVWMVKDTSFHLLQEIQEHLKPVTSLVISESGDRLYSGSLDRTAKVWSIGKAAIHCVQVHDMKEQIHNLIVTDSISCFTAQGAGVKVQSWNGESKLLNSNKYVKCLAHVHGRLYCGCHDSSVQEINLDTGNVSTIQSGSKKLLGKAYPIHALQLHGELIYAAGSSLDGSVIKMWDNSSYRLVGSLQTGLEVRAMAVSSELIYLGGKGVAVEIWDKTKHNKLDTLQTATNSRVLCMSLDRNEEILVIGTSDGQIQAWRVN 1301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02281 1301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 351 438 IPR013083 -
Aip03g02281 1301 Gene3D - 1119 1301 IPR015943 GO:0005515
Aip03g02281 1301 SUPERFAMILY RING/U-box 358 436 - -
Aip03g02281 1301 SMART WD40_4 1051 1090 IPR001680 GO:0005515
Aip03g02281 1301 SMART WD40_4 1259 1299 IPR001680 GO:0005515
Aip03g02281 1301 SMART WD40_4 1171 1217 IPR001680 GO:0005515
Aip03g02281 1301 SMART WD40_4 1009 1046 IPR001680 GO:0005515
Aip03g02281 1301 ProSiteProfiles U-box domain profile. 360 435 IPR003613 GO:0004842|GO:0016567
Aip03g02281 1301 Coils Coil 186 206 - -
Aip03g02281 1301 Pfam WD domain, G-beta repeat 1055 1090 IPR001680 GO:0005515
Aip03g02281 1301 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1058 1091 - -
Aip03g02281 1301 MobiDBLite consensus disorder prediction 301 319 - -
Aip03g02281 1301 Pfam U-box domain 362 432 IPR003613 GO:0004842|GO:0016567
Aip03g02281 1301 CDD RING-Ubox_PUB 365 407 IPR045210 -
Aip03g02281 1301 ProSiteProfiles Trp-Asp (WD) repeats profile. 1058 1091 IPR001680 GO:0005515
Aip03g02281 1301 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1300 - -
Aip03g02281 1301 Gene3D - 989 1118 IPR015943 GO:0005515
Aip03g02281 1301 SUPERFAMILY WD40 repeat-like 1025 1300 IPR036322 GO:0005515
Aip03g02281 1301 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1267 1301 - -
Aip03g02281 1301 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1300 - -
Aip03g02281 1301 SMART Ubox_2 364 428 IPR003613 GO:0004842|GO:0016567
Aip03g02281 1301 MobiDBLite consensus disorder prediction 283 333 - -
Aip03g02281 1301 ProSiteProfiles Trp-Asp (WD) repeats profile. 1267 1301 IPR001680 GO:0005515
Aip03g02281 1301 SUPERFAMILY ARM repeat 40 999 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02281 Aip-Chr3 35250085 35257259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02281 362 443 U-box Gene Family AT5G42340 47.561 2.27e-17 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02281 - - gmx:100808867 1772.29