Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02261 ATGGATGTTGCTGAGCTTGAAGAAAATCTTTTTGCAGCAAGTGATGCCAAGTTACATGGAGAAATGTGCAGGACTCTTTCTGCAATATATTGTAAAATATTGAGAATATTTCCTTCTCTAGAAGCAGCTAAGCCTAGGAGCAAATCTGGAATACAGGCATTATGTTCACTGCATGTAGCTTTAGAGAAGTCGAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACCTGGCGATAACTGGCGACGCCGTACTTCAAAAATTTGAAAAGGCTAAGTCTGCACTTGTTGACAGTCTTAAACTGGTGGAAGATATTGTTCCTCAATCTATTGGGTTGAGGGGCGGTCTGGATGAACTTGCAAGTACGGTTTTTGCAATTGACCCCTCAGAAAAACAAGTTGGCGACGATTTAATTGCATTGCTTCAGCAGGGAAGGAAGCTTGACAACTCTAATGACAGTAGTGAACTTGAATGTTTTCATCAGGCTGCTACTAGACTTGAAATTACATCTTCAAGAGCAGCTCTTACTGAACGAAGAGCTCTCAAAAAACTCATTGAAAGGGCTCAGGCTGAGGAAGACAAGCGGAAGGAATCAATTATTGCATATCTTTTACACCTCATGAGGAAATATTCTAAGTTGTTCAGAAGTGAATTCTCAGATGATAATGATTCTCAGGGCTCCCAACCCTGTTCACCTACTGTTAATGGATATGTTGAGGATGGTGTTCAGACTCAAGCGTTTGATAGAGTATTTTCAAAACTTAGTTCCATTAACTTAAAGCCGAATAATAGAAAATCAGGCCAGATGCCCCTTCCCCCTGAAGAGTTGAGGTGTCCGATATCTCTGCAACTCATGAGTGATCCTGTTATAATTGCTTCGGGTCAAACATACGAAAGGGCTTGTATAGAAAAATGGTTCAGTGATGGGCATAACACCTGCCCAAAGACTCAACAGAAACTTCCACATCTTTTATTGACTCCTAATTACAATGTCAAGAATCTTGTGGCTAGTTGGTGTGCACAGAATGGAATTCCTATTCCTGAAGGCCCTCCCCAATCTCTTGATTTTAACTATTGGAGATTGGCTTTATCAGATACCGATTCCACAAATTCAAAATCTGTTAACAGTGTAAATTCTTGCAAGTTGAAAGGTGTGAAAGTGGTTCCAGTAGAAGAGAGCGGCATGTCAGAGCAAACTGGGGTAGCTGGAGCTGAAAGTGTGTCTACACAAGAGGACGATAATGAACAGTATCTTAGTTTTCTGAAAGTCTTAACAGAAGGGAACGACTCACAGGAGAAGTGTAAGGTTGTACAAAGGTTAAGGATGTTGCTAAGGGATGATGAGGACGCCAGGACATTTATGGGTGCTAATGGATTTGTTGAAGCACTTATGCAGTTTCTCCAATCAGCTTTGCGTGAAGGAAATGCGATGGATCAAGAAAATGGAGCTATGGCCCTGTTCAACCTTGCTGTGAACAATGACAGAAACAAGGAAATGATGATATCAGCCGGAGTCTTATCCTTGTTGGACGAAATGATCTACAAACCTACTTGCTATGGGTGTGCAACTGCCCTGTATCTAAATCTCTCTTGCCTTGAAGAATTCAAGCCTATGATTGGTTCAGGTCAGGCTGTCCCATTCCTAGTCAAGATTCTTAAATCCAGCTCTGATGTTCAATGCAAGCTAGATTCGCTCCACACACTCTATAATCTTTCCACCGTACCCACCAACATTCCATACCTCCTTTCATCTGGAATCATTGTTGGCTTGCAATCCCAGCTTGTAGGCCAGGGTGATAGTGTGTGGACCGAAAAATGCATAGCTGTATTGATAAATTTGGCGGTTTCTCAATTGGGTAGAGAGGAAATTGTGTCGTCTCCAGGAATCATAAGCACATTGGCGTCGATACTCGACACTGGTGAGCTCCTAGAGCAAGAGCAAGCCGTGGCATGTCTCCTAATTTTGTGTAACCGGAGCAAGAAATGTTGCGAGATGGTCCTTCAAGAAGGGGTCATCCCTGCCTTGGTCTCAATATCGGTGAATGGGACGTCAAGAGGCAGAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCAACGACAAGAAGAGCATTCCCCGTCCAAGCCACAAGGCCGACCAGAAACCAGCAATTCATCTATGCCTAAGCCTGAGATGAAACCACTATGCAAGTCTACATCTAGGAGAAAGCTGCCAGTGTTTAGATTGCCATTGTCAGCTACTGAACCGTTGCTGGAAAGTCATTGGCGGCCATCGGTGCATGTTCGATGTACGGCAATGTGCGTAAGTCTTCCAAATTGGATAGCTGGCCAAACCCTTCATACATTCCAGAGCCATGATCTTGATCTTGATGTTGACGGTGCTGAATTTAGCAAATGCCTCACATGA 2502 0.4117 MDVAELEENLFAASDAKLHGEMCRTLSAIYCKILRIFPSLEAAKPRSKSGIQALCSLHVALEKSKNVLQHCSECSKLYLAITGDAVLQKFEKAKSALVDSLKLVEDIVPQSIGLRGGLDELASTVFAIDPSEKQVGDDLIALLQQGRKLDNSNDSSELECFHQAATRLEITSSRAALTERRALKKLIERAQAEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVNGYVEDGVQTQAFDRVFSKLSSINLKPNNRKSGQMPLPPEELRCPISLQLMSDPVIIASGQTYERACIEKWFSDGHNTCPKTQQKLPHLLLTPNYNVKNLVASWCAQNGIPIPEGPPQSLDFNYWRLALSDTDSTNSKSVNSVNSCKLKGVKVVPVEESGMSEQTGVAGAESVSTQEDDNEQYLSFLKVLTEGNDSQEKCKVVQRLRMLLRDDEDARTFMGANGFVEALMQFLQSALREGNAMDQENGAMALFNLAVNNDRNKEMMISAGVLSLLDEMIYKPTCYGCATALYLNLSCLEEFKPMIGSGQAVPFLVKILKSSSDVQCKLDSLHTLYNLSTVPTNIPYLLSSGIIVGLQSQLVGQGDSVWTEKCIAVLINLAVSQLGREEIVSSPGIISTLASILDTGELLEQEQAVACLLILCNRSKKCCEMVLQEGVIPALVSISVNGTSRGREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQRQEEHSPSKPQGRPETSNSSMPKPEMKPLCKSTSRRKLPVFRLPLSATEPLLESHWRPSVHVRCTAMCVSLPNWIAGQTLHTFQSHDLDLDVDGAEFSKCLT 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02261 833 Gene3D - 416 598 IPR011989 -
Aip03g02261 833 ProSiteProfiles U-box domain profile. 273 347 IPR003613 GO:0004842|GO:0016567
Aip03g02261 833 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 691 - -
Aip03g02261 833 SUPERFAMILY ARM repeat 422 684 IPR016024 -
Aip03g02261 833 CDD RING-Ubox_PUB 278 320 IPR045210 -
Aip03g02261 833 SMART Ubox_2 277 340 IPR003613 GO:0004842|GO:0016567
Aip03g02261 833 SUPERFAMILY RING/U-box 273 349 - -
Aip03g02261 833 Coils Coil 689 690 - -
Aip03g02261 833 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 347 IPR013083 -
Aip03g02261 833 Coils Coil 730 735 - -
Aip03g02261 833 Pfam U-box domain 275 344 IPR003613 GO:0004842|GO:0016567
Aip03g02261 833 PANTHER U BOX DOMAIN-CONTAINING 1 691 - -
Aip03g02261 833 Gene3D - 599 691 IPR011989 -
Aip03g02261 833 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 460 506 IPR000225 GO:0005515
Aip03g02261 833 MobiDBLite consensus disorder prediction 714 762 - -
Aip03g02261 833 Coils Coil 173 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02261 Aip-Chr3 34809334 34815612 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02261 1 768 U-box Gene Family AT1G24330 61.783 0.0 942
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02261 - - adu:107478647 1271.14