Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02217 ATGATGGATAATGTTAACGTTATAGATTTGGGAGGCTTCGATCTGGACGAGGCTCTGGCTACAGTGGCCGGAGAATCGCAGGTGGTAATTGCGGCGGCTTCGAAGAGCTTCGTGTCAAAGTTGCCGGTGGCAGAGGCGGAAGAGGTGGAGGAAAAGGATGTGTGCTCGGTATGCATGGAAGGGTTTGAGGGCGGAGGAAACAAGCGAGTCCCATGCGGCCACGTGTACCACTCAGAATGCATCATTCTGTGGCTGTCCCGCTCCAACTCCTCTTGCCCTCTCTGCCGCCGCCATATCTTCCTCAGCTAA 309 0.5502 MMDNVNVIDLGGFDLDEALATVAGESQVVIAAASKSFVSKLPVAEAEEVEEKDVCSVCMEGFEGGGNKRVPCGHVYHSECIILWLSRSNSSCPLCRRHIFLS 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02217 102 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 12 99 - -
Aip03g02217 102 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 100 IPR013083 -
Aip03g02217 102 SMART ring_2 55 95 IPR001841 -
Aip03g02217 102 ProSiteProfiles Zinc finger RING-type profile. 55 96 IPR001841 -
Aip03g02217 102 SMART ringv_2 54 96 IPR011016 GO:0008270
Aip03g02217 102 Pfam Ring finger domain 54 96 IPR001841 -
Aip03g02217 102 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE 12 99 - -
Aip03g02217 102 SUPERFAMILY RING/U-box 46 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02217 Aip-Chr3 33830708 33831152 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02217 33 96 C3H Transcription Factor Family AT3G02340 45.588 9.80e-12 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02217 - K22378 gmx:102669154 95.5153