Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02200 ATGGCTGAACGCGGCAGCGGAGATCGTGGCAGATTCCAGCATGGCTTCAGAGGCCGCGGTGGTTGGGGCAACAGGGCTGCGATGGGCGTCACAATGGCAGTGGACGCCACAGGGGCGGATGAAGTCATGAAGATCATGCCCGTTCAAAAACAAACACATGCCGGTCAAAAAACCCGTTTCAAGCCTTTCGTCGTTGTCGGTGGCACCAACGGTCACGTCAGACTCGGTGTTAAGTGCAGCAAGGAGATTGCAACTGCCATTTGCAGTGCCATTATATTGGCAAAACTTTTGGTGATTCTTGTGAGAAGAGGTTATTGGGGTAACAAGATTGGAAAGCTACACACCGTTCCCTGCAAGGTCACCAAAAAATGTGGTTCCGTCACTGTCTGTATAGTGCCTGCTCCTCGTGGTTTTGGAATTGTTGCTGTTAGGGTTTCAAGAAGGTCTTGCAATTTGCAGGGATTGATGATGTATTCACTTCTTCTAGAGAATCCACCATTTCTTTGGAAATTTCACACTGATCTACTTGCCAAGCCAACAGCCAAGGCTCTCATCTTGGAGGATGAAAGGGTCGAGCTTAATCTAGCTCTTTGCCATCTGATTATTGTGTCTGTTCAAGATTGGAATTATTACTTGAATAAGTTTTAG 648 0.4738 MAERGSGDRGRFQHGFRGRGGWGNRAAMGVTMAVDATGADEVMKIMPVQKQTHAGQKTRFKPFVVVGGTNGHVRLGVKCSKEIATAICSAIILAKLLVILVRRGYWGNKIGKLHTVPCKVTKKCGSVTVCIVPAPRGFGIVAVRVSRRSCNLQGLMMYSLLLENPPFLWKFHTDLLAKPTAKALILEDERVELNLALCHLIIVSVQDWNYYLNKF 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02200 215 ProSiteProfiles S5 double stranded RNA-binding domain profile. 38 101 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aip03g02200 215 PANTHER BNAA03G19630D PROTEIN 32 154 - -
Aip03g02200 215 Gene3D - 101 159 IPR014721 -
Aip03g02200 215 PANTHER BNAC04G47870D PROTEIN 32 154 - -
Aip03g02200 215 Pfam Ribosomal protein S5, N-terminal domain 40 101 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aip03g02200 215 SUPERFAMILY dsRNA-binding domain-like 40 103 - -
Aip03g02200 215 Gene3D - 27 99 - -
Aip03g02200 215 Pfam Ribosomal protein S5, C-terminal domain 123 154 IPR005324 GO:0003735|GO:0005840|GO:0006412
Aip03g02200 215 PANTHER RIBOSOMAL S SUBUNIT 32 154 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aip03g02200 215 SUPERFAMILY Ribosomal protein S5 domain 2-like 114 155 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02200 Aip-Chr3 33493659 33494465 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02200 30 155 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 72.222 2.66e-56 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02200 K02981 - gmx:100797105 194.126