Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02187 ATGTCCATAAACGAGGATGATGCGAAGAATGATTCTGATAATGATTTGGGTGATAATTTCGATTATCAACCGAATGCAGAAGATGATGCTGAAGACGACGATGTGGATTCGCTGGATTCTACTAGCAAGAGTGAAGAAGTTTGTGGTGTAAAAAGAATAGCAGATTTAATGGTGGAGGATATTTGGAACCTGGAGTTTAGGACAGAGGATGAGGCCTGCCAATTTTATAACGCTTATTCTTGTTGGTATGGATTTGTAATGAGGAAGGACGACGTGGTTAGGGATAATCAAGGTAGAATCATTAGTAGGCAACTTGTTTGCAATAAAGAGGGCTGGAGGAATATGAGGTATCTTGATCTGGATGATAGATCAAGGGAGGCAAGGTCACTAACGCAAACCAAGTGTCCAGCTCGGCTTAGGGTAAAGCTTGACTATGGCTGCGGTAGATGGAAGGTATCATGTTTTGTGGAATCTCACAACCACGATCTGACGCCACCCCAATTTGTGCATCTGAAGGGTGGATATCGTCATGCTGGCTTCACACGCAAAGATTTGTACAACCACATTGATCGTTATCGTCGGTCAAAGGTTAAAAGCGGGGATGCCAATGCGGCAATAAACTATTTGATTGGCAAGTCAAACAACAATCCGCTGTTCTTTGGAAAGTATACGTTCACTAGTGACGAAAGGCTCGAGCATATTTTTTGGGCAGATGGGCAGCCAATTATCGACTATCACTGCTTTGGAGATATTGTTGCCTTTGATTCAACCTACAAGAAGAATAAATACAACAAGCCTTTGGTAATTTTCTCCGGATGCAATCATCACGGGCAAACTGTTATCTTCGACTCCGGCCTACTATCCGACGAAACCACAGAGACGTATAAGTGGTTGTTGGAAACCTTTGTTAAAGCCATGGCTGGGAAAAGTTCTAAAGCAGTAATAACTGACGGAGACCTTGCCATGCGAGATGCAATCAAGAATGTTCTTCCTGATGCGACCCATCGGTTATGCGGATGGCATCTGCAGAGAAATGCATGCGAAAATATAAAGAATCCTAATTTCCTGCGCGATTTTAAGGGTCTTATATACGACAACAACGACCACAGAGACTTTGATCGGAGATGGGCAGCCATTTTGGATAAGCACAACATTGTTGGGAGTACCTGGATGGAAAAGACGTACGAAACTCGTTCGATGTGGTCTCATTGTTTCCTCCGGGATAAGTTTTTCGGTTACATAAGGATGACATCACAGTGCGAAGGTATAAATTCTCTCATCAGATTTTATGTTAATCGCAAGAACACCCTCATTGACTTCATGCATAACCTGGATAGGGCCTTAAAGGAGTATAGAAACAACGAATTAATCGCTAACTTTAAGTCTCAGTGCTCAGAACCAGTGATGATTACCTCGTTGGAGGTATATGAAAGATTTGCATCATGTTATTTCACTCGAAACATTTTTAAGGAAATTCGTAATGAGATTCAGAGGGCAGGGGCTTTGAATATCAAGGTACTAAGCACAACATTGGACAAGGTCGAGTTCAGTATGACTGCTCTCGGAGACCCGGCCAAAGATCGACGAGTGGAAGTCGATAGAGGTAAGAATATGTTCTCGTGCTCGTGCAAGCTGTTTAAATCACGTGGTATTCCCTGTAGTCATGTCTTCTGTGCCATGAAGTTCGAAAACATACTTGAGTTTCCAGATTTGTTGATCTACAAAAGGTGGACAAAGAATGCAAAGAACGAATTTATTAGCACACAAATGCCTGTGAATGATGACGTCGAAAGGGTCTTAAAGTTTCGAGTTGTTGCATTGGCATCAAATTGCAACAAGCTGTGTGATATTGCTTGCAAGGATGTTGCATACTTTGATAAAGTCCAATCTGAACTTGTCAACTTAATTATCCACCAGCAGTCACGCAAACAAGGCAACTCAACGCCTAATGTTAACGTGGAAGGCATCAACGATCCCTTTGTTGTGAAAAGCAAAAGAGCCCCTTCCAAGAGGTCTTCTTGGAAGAAGAAGAGAGCATGCTCTAATTGCCACAAGTACGGTCATTACTACAAGCGCTGTCCAGAACTGATGCAGCATAGTGTGGAAGGTAACCCCCGCGATCGATCAGACGGCAATGCATCAGCCAGGGACTCAGGTTTTAGTCCAGAAAGGTTTGCTAATTCTTCGAGGTCGTTCTCAGTTAAGTCCGAAAATCACTCAGGACCTAAGACCAAGCCTTTTAAAAAGGCTGGAACAAGGAAGTTTACGGTGACAGGTATGAAGAACCGGAAGGGTAAAGACAACACTTTTGTTGAGCGGAACCTCAATGAAAGCAGTGAATCCATTGACATCGCATCCATGAATGGATTTTTCAACAAAAATCTCTATTCGTTAACACAGGTGAAGGAGTCACAGGAGGACAAGGGACATTCATTCACAAACTATGAATGCGTTAATGATGTCATGGATGAAAAATGTGACACACCATATGTGCAGATCGATGTCCGAGATCCGTCACCATCGTCAATGCCTTGTGGCAATAAACAAGGATCGTACATGGCATTGTTCGCATCAATGCATAGGACACTTTGA 2592 0.4279 MSINEDDAKNDSDNDLGDNFDYQPNAEDDAEDDDVDSLDSTSKSEEVCGVKRIADLMVEDIWNLEFRTEDEACQFYNAYSCWYGFVMRKDDVVRDNQGRIISRQLVCNKEGWRNMRYLDLDDRSREARSLTQTKCPARLRVKLDYGCGRWKVSCFVESHNHDLTPPQFVHLKGGYRHAGFTRKDLYNHIDRYRRSKVKSGDANAAINYLIGKSNNNPLFFGKYTFTSDERLEHIFWADGQPIIDYHCFGDIVAFDSTYKKNKYNKPLVIFSGCNHHGQTVIFDSGLLSDETTETYKWLLETFVKAMAGKSSKAVITDGDLAMRDAIKNVLPDATHRLCGWHLQRNACENIKNPNFLRDFKGLIYDNNDHRDFDRRWAAILDKHNIVGSTWMEKTYETRSMWSHCFLRDKFFGYIRMTSQCEGINSLIRFYVNRKNTLIDFMHNLDRALKEYRNNELIANFKSQCSEPVMITSLEVYERFASCYFTRNIFKEIRNEIQRAGALNIKVLSTTLDKVEFSMTALGDPAKDRRVEVDRGKNMFSCSCKLFKSRGIPCSHVFCAMKFENILEFPDLLIYKRWTKNAKNEFISTQMPVNDDVERVLKFRVVALASNCNKLCDIACKDVAYFDKVQSELVNLIIHQQSRKQGNSTPNVNVEGINDPFVVKSKRAPSKRSSWKKKRACSNCHKYGHYYKRCPELMQHSVEGNPRDRSDGNASARDSGFSPERFANSSRSFSVKSENHSGPKTKPFKKAGTRKFTVTGMKNRKGKDNTFVERNLNESSESIDIASMNGFFNKNLYSLTQVKESQEDKGHSFTNYECVNDVMDEKCDTPYVQIDVRDPSPSSMPCGNKQGSYMALFASMHRTL 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02187 863 ProSiteProfiles Zinc finger SWIM-type profile. 528 564 IPR007527 GO:0008270
Aip03g02187 863 SMART 26again6 539 566 IPR006564 GO:0008270
Aip03g02187 863 PANTHER OS02G0262500 PROTEIN 173 679 - -
Aip03g02187 863 MobiDBLite consensus disorder prediction 1 42 - -
Aip03g02187 863 ProSiteProfiles Zinc finger CCHC-type profile. 680 695 IPR001878 GO:0003676|GO:0008270
Aip03g02187 863 MobiDBLite consensus disorder prediction 22 39 - -
Aip03g02187 863 MobiDBLite consensus disorder prediction 1 16 - -
Aip03g02187 863 MobiDBLite consensus disorder prediction 721 740 - -
Aip03g02187 863 Pfam FAR1 DNA-binding domain 74 164 IPR004330 -
Aip03g02187 863 SUPERFAMILY Retrovirus zinc finger-like domains 667 698 IPR036875 GO:0003676|GO:0008270
Aip03g02187 863 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 173 679 IPR031052 GO:0006355
Aip03g02187 863 Pfam MULE transposase domain 251 345 IPR018289 -
Aip03g02187 863 MobiDBLite consensus disorder prediction 700 749 - -
Aip03g02187 863 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 60 167 IPR031052 GO:0006355
Aip03g02187 863 PANTHER OS02G0262500 PROTEIN 60 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02187 Aip-Chr3 33268471 33271471 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip03g02187 MULE 2.2e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02187 - - ahf:112755379 1542.32