Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02180 ATGTTTCCAAACAAGGCCTGCCTTCTCGCTTTCCTCCTCCTCCTTCGCAGTACCATCCATTTAACCGCAGCCATTGGTGTCTCTGTTGGGGTTGGTGGTGGTTTTGGAGTAGGCGTTGGCATTGGCAATGGCAATGGCAATGTTGGCAATGGCAACACCCCATCAGAGCCTCCCTCATCAAAGTTGGAGAGTGCCTACAAAGCTCTGCAGGCATGGAAATCAGCCATCTCCGATGACCCTCTCAAGCTTCTAGATTCATGGGTTGGTCCTAATGTCTGCTCCTACAAAGGAGTGTTCTGTTCACCCCCTCAAGACGATGAAATCTCTTCTCTTTCAACATCTACTGCCACCGCCAACGTTGTAGTTGCAGGAATCGACCTCAACCATGCAAATCTCCAAGGAACTCTCGTCAAAGAACTCTCTTTACTGGTTGACATGTCTCTTCTTCACCTCAACAGTAACAGGTTCAGTGGCACAGTTCCCGACACATTCAAAGACCTCGTTTCTCTGGAAGAACTGGACCTCAGCAACAACCACCTCTCTGGTCCATTCCCCATTGTTACTCTCTACATGCCAAGCCTCCTTTACTTGGACCTCAGATTCAACTCATTCTCAGGTCAACTCCCTGATGAACTCTTCAACAGGAAGCTCGATGCCATATTCCTCAACAACAACCAATTCCAAGGTGAGATCCCTCAGAGCTTGGGGAATTCACCCGCATCGGTGATCAATCTGGCTAACAACAAGCTCAGTGGGAACATTCCAACAAGTTTTGGGCTCATGGGGAATAAGCTCAAAGAGGTTCTGTTCCTCAACAACCAGCTAACAGGTTGCATCCCTGAAGGGGTGGGTCTGTTTGATGAACTTGAAGTGTTTGATGTGAGCTTCAATTCACTCATGGGGCACTTGCCAGACACAATATCATGCTTGCAAGACATTGAGGTTCTCAATCTGGGACACAACAAGCTCTCAGGAGAGTTATCTGATGTGATCTGCTCCTTGACAAGTTTGGTGAACCTCACCGTTGCTTACAACTTCTTCTCTGGTTTGAGCCAGCAATGCAGCAGGCTTTTCAACATTGGCTTTGATTTCTCAGGAAACTGCATTCCTGGTAGAGACATGCAGAGACCTCAACCAGAGTGTTCTGTTATTCCAGGTGGCACCCTCAATTGCCTTAGAATCCCTACTCCAAGGCCTCTTGTTTGTGCTTCTTTGCCTCGAATCATCTTCTCCAATAATATGCAATCATCCTCACACCATACTCCTTCTTCTTCTTCTTCATATCCTTGA 1290 0.4736 MFPNKACLLAFLLLLRSTIHLTAAIGVSVGVGGGFGVGVGIGNGNGNVGNGNTPSEPPSSKLESAYKALQAWKSAISDDPLKLLDSWVGPNVCSYKGVFCSPPQDDEISSLSTSTATANVVVAGIDLNHANLQGTLVKELSLLVDMSLLHLNSNRFSGTVPDTFKDLVSLEELDLSNNHLSGPFPIVTLYMPSLLYLDLRFNSFSGQLPDELFNRKLDAIFLNNNQFQGEIPQSLGNSPASVINLANNKLSGNIPTSFGLMGNKLKEVLFLNNQLTGCIPEGVGLFDELEVFDVSFNSLMGHLPDTISCLQDIEVLNLGHNKLSGELSDVICSLTSLVNLTVAYNFFSGLSQQCSRLFNIGFDFSGNCIPGRDMQRPQPECSVIPGGTLNCLRIPTPRPLVCASLPRIIFSNNMQSSSHHTPSSSSSYP 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02180 429 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 5 419 - -
Aip03g02180 429 ProSiteProfiles Leucine-rich repeat profile. 169 190 IPR001611 GO:0005515
Aip03g02180 429 PANTHER LRR/EXTENSIN 5 419 - -
Aip03g02180 429 Gene3D Ribonuclease Inhibitor 238 360 IPR032675 -
Aip03g02180 429 PRINTS Leucine-rich repeat signature 170 183 - -
Aip03g02180 429 PRINTS Leucine-rich repeat signature 310 323 - -
Aip03g02180 429 Gene3D Ribonuclease Inhibitor 63 237 IPR032675 -
Aip03g02180 429 SUPERFAMILY L domain-like 65 359 - -
Aip03g02180 429 Pfam Leucine rich repeat N-terminal domain 64 101 IPR013210 -
Aip03g02180 429 Pfam Leucine rich repeat 149 203 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02180 Aip-Chr3 33118975 33120567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02180 61 384 Leucine-rich Repeat extension Gene Families AT3G24480 50.926 1.27e-104 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02180 - - gmx:100820611 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g02180 03 33118975 33120567 Aip03g02180 03 33118975 33120567 ECH