Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02174 ATGAATAAGATGGATCTGATAGATGCGAAGCTGCAAGAAGAGCATCAATTGTGTGCATCATCGTTGAAACAGTGCCCCGCTTGTGGACATAAGTTTGAAGGCAGCAGCGGGAAGAAGGCGGAGTGGGAGTGGGTAGGTCTGCCAGCGGGAGTGAAGTTCGATCCAACAGACCAAGAACTGATAGAGCATCTAGAAGCAAAAGTAGAGGCAAAGAGATCGCACCCTTTGATCGATGAGTTCATTCCCACCATTGAAGGAGAAGATGGAATCTGTTACACCCATCCCGAGAAGCTCCCAGGTGTGACGAGGGATGGGTTGAGCAGACACTTCTTTCACAGGCCATCAAGGGCGTACACCACTGGAACACGGAAGAGAAGAAAGATTCTTCAAAACGATGAGGCGGAGGCCGAGAGAGGAGAGACACGGTGGCACAAGACCGGTAAGACAAGGGCCGTTATGCTCAAGGGAAAGCAGAAGGGGTGCAAGAAGATTCTGGTGTTGTACACCAACTTCGGCAAGAACAGGAAGCCCCAGAAGACCAACTGGGTCATGCATCAGTACCACCTCGGACTCCATGAAGAGGAGAAAGACGGGGAGCTCGTCGTCTCTAAGATTTTCTACCAAACTCAGCCGAGGCAATGCAGTTGGTCTTCTTCTTCTTCTTCTTCTTCAATTACTGCTGTTGCTCCCCCTGTCAAAACTAATAATGACACCTGTCCCGTTCTTGGATTCCCTCCTATGGAACATTTCAGCAGCTTCATCCCTCTCAGAAAAACCCTCCATAATGAGGAAGTTGGAATAGGAGGGGAAACTTGCACACCAGCGTCACATATTCCTTCATCAAATCCTGTTGGAGTCTTCCATCACAACACTTCCATCATCCTTGACGACCTTATCTCCGCTAGATTCATGACTCCTCCTCCTCCTCCTCAGTTCCACCAGCAGCATGATAATAAAGTAGTAGGAGGAACCTCTGCTTCTGGTTTAGAGGAACTCATCATGGGCTGCACTTCAACTTCAACCACTCATAATATCACCAAAGAGGCATCAATGTCAAACACAAACCCACAAGAAGCTGAGTGGTTGAAGTACTCTTCTTATTGGGCTGACCCTCAGCCTCAGCCTCAGCCTCATCTTCATGGGTAA 1146 0.4869 MNKMDLIDAKLQEEHQLCASSLKQCPACGHKFEGSSGKKAEWEWVGLPAGVKFDPTDQELIEHLEAKVEAKRSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSRAYTTGTRKRRKILQNDEAEAERGETRWHKTGKTRAVMLKGKQKGCKKILVLYTNFGKNRKPQKTNWVMHQYHLGLHEEEKDGELVVSKIFYQTQPRQCSWSSSSSSSSITAVAPPVKTNNDTCPVLGFPPMEHFSSFIPLRKTLHNEEVGIGGETCTPASHIPSSNPVGVFHHNTSIILDDLISARFMTPPPPPQFHQQHDNKVVGGTSASGLEELIMGCTSTSTTHNITKEASMSNTNPQEAEWLKYSSYWADPQPQPQPHLHG 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02174 381 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Aip03g02174 381 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 223 IPR044799 GO:0003700
Aip03g02174 381 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 3 223 - -
Aip03g02174 381 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Aip03g02174 381 SUPERFAMILY NAC domain 42 208 IPR036093 GO:0003677|GO:0006355
Aip03g02174 381 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02174 Aip-Chr3 33001190 33004454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02174 2 376 NAC Transcription Factor Family AT5G56620 50.824 6.82e-123 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip03g02174 NAM 8.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02174 - - gmx:100795246 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g02174 03 33001190 33004454 Aip03g02174 03 33001190 33004454 ECH