Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02160 ATGACCGTGGAGGACCAAATTGACCGGTTCCCCGTGGGTATGCGTGTTCTCGCTGTGGATGATGACCCAACTTGCCTCAAAGTCTTGGAGAATCTCCTTCGCAAATGCCAATACCAAGTTACTACAACTAATCAAGCAATTGAGGCGCTGAGAATGTTGAGGGAAAACAGGAACAAGTTTGACCTCGTCATTAGCGATGTGAATATGCCTGACATGGATGGATTTAAGCTCCTTGAGTTGGTGGGGCTTGAAATGGACTTACCTGTGATCATGTTGTCTGGACACAGTGACACAAAGCTGGTGATGAAGGGTGTTACACATGGTGCAGTTGACTATTTGCTGAAACCTGTTCGGATTGAAGAGCTGAAGAACATTTGGCAACATGTTGTCCGAAGGAAGAACTTTGATCCCAGGGATCAGAATAAGGGTTCCAATGACAAAAGGGGTCCCAATGCTGCTGGGGAAGGTAATCAAAGTATCATATCAGAAGACGGCAGTGACCAGAATAAAAATCTTGGCAAAAAACGAAAGGACCAGACTGAAGAAGAGGAAGATGATGGTGAAGACAATGGGGAGGATAATGATGACCCTTCATCACAAAAGAAGCCTCGTGTTGTTTGGTCTGTCGAGCTTCATAGAAAATTTGTTGCAGCAGTTAATCAACTTGGCCTTGATAAGGCTGTCCCTAAGAAAATACTTGATCTGATGAATGTTGAAGGACTTACTAGGGAAAATGTGGCAAGCCATCTGCAGAAATATAGGCTTTACCTGAAAAAGGCAACCCAGCAAGCTAGCATGGTTGCTGCATTGGGTAATACCGAATCATACCTGAGGATCGGTTCAATAGATGCATATGCAGAGTTTTGCACCTCTTCTGGTTCAGGAAAGATTCCAAACCCTGCATTGCAATCATATGCCTCGAGTGGTATTTTTGGCAGGCTGAATTCCCCAGCTAGCTTGAGCATGAGAGGCATTAGTGCTTCCACTCTAATTCAGCCTCCTGTTCAGCCTCAAAACCTGAACAGCACCTTGAGCCCTCTGGGTAACATTCAGGCATCAATATTTCCGGCAAATCAAACCTCAAGTTTATTGCAAGGAATTCCAACATCAATTGAGCTTAATCAGTCTAAGCAAAACAACTGTACAACAGGTATAACACAAGTAAATCAAGTTAGTTGTAGTGGATTTACTGCTGCCTCTGGCTTCCGTGACCGTAGGCTTACAGTTGGTACAGCAAGCAATGCTCTACCTTCAGCCGCCTGTAACTCACCACAAACACATAATTCAGGAGCATTTAGAAATCAGCCTCCTGTTAGACCGGCTTCTTTAGGCACGGATTCCTTTGATGCTGGAATTTGTGGGCCTTCTAATATGTTGGATTATAATCGGTGTAACGAAAACTGGCAGAATGCAGAACAGTTGTCTAAACTTCCTGCCAATCCCTTGCCATTGTGTGAGCCGTTCAATAATGATCCACTCCCTCCCACTGGCATAAATGTTGCCAACACAAGTACTCGTATTGGTAACAGTCCTGTTGATTATTCATCCAGAGTCGCGATTTCTGTTCCTTTGGAGGATACAAGAAATGAGCTGCAGCGCCAAGAAGGCTTAATTGAAAATATTGTACAGCCTTCGAGTTATACAACACCATCACAAAGGTGGGAAGAACATAAACTTGAATACAGCCAAAACATGAGCCGTCCCTTCAACTCTGTAAACTCTCATGTTTCTTCAAGTCGAGTAACAAGTTCTTTGGGGCATAATTTAAACCAAACAAATGCAACTTGCAGCAACAGTGTTGATGCCTCATTTGTTGGCCAACTGAGTGGAGCTCCCCCATCAATCATCCAGTGCACTAATGTTGACACAAGATTGAAGTCAAATGATGCCTACATCTTGGAGCTAATGAAGTCCCGGGATGGATTTATTCAGAATAATTTTGGCACCTTGGATGACATAATGGTCCCAATGGTCAAAAGGGAACAAAATGAACCGACATTTATAGATGGAGAAATGGGATTTGAGGCTTACCCCGTTGGATCATGTATCTGA 2052 0.4366 MTVEDQIDRFPVGMRVLAVDDDPTCLKVLENLLRKCQYQVTTTNQAIEALRMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSGHSDTKLVMKGVTHGAVDYLLKPVRIEELKNIWQHVVRRKNFDPRDQNKGSNDKRGPNAAGEGNQSIISEDGSDQNKNLGKKRKDQTEEEEDDGEDNGEDNDDPSSQKKPRVVWSVELHRKFVAAVNQLGLDKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKKATQQASMVAALGNTESYLRIGSIDAYAEFCTSSGSGKIPNPALQSYASSGIFGRLNSPASLSMRGISASTLIQPPVQPQNLNSTLSPLGNIQASIFPANQTSSLLQGIPTSIELNQSKQNNCTTGITQVNQVSCSGFTAASGFRDRRLTVGTASNALPSAACNSPQTHNSGAFRNQPPVRPASLGTDSFDAGICGPSNMLDYNRCNENWQNAEQLSKLPANPLPLCEPFNNDPLPPTGINVANTSTRIGNSPVDYSSRVAISVPLEDTRNELQRQEGLIENIVQPSSYTTPSQRWEEHKLEYSQNMSRPFNSVNSHVSSSRVTSSLGHNLNQTNATCSNSVDASFVGQLSGAPPSIIQCTNVDTRLKSNDAYILELMKSRDGFIQNNFGTLDDIMVPMVKREQNEPTFIDGEMGFEAYPVGSCI 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02160 683 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 202 255 IPR006447 GO:0003677
Aip03g02160 683 MobiDBLite consensus disorder prediction 135 202 - -
Aip03g02160 683 SUPERFAMILY CheY-like 13 135 IPR011006 -
Aip03g02160 683 Gene3D - 13 148 - -
Aip03g02160 683 Gene3D - 198 260 - -
Aip03g02160 683 ProSiteProfiles Response regulatory domain profile. 15 130 IPR001789 GO:0000160
Aip03g02160 683 CDD REC_typeB_ARR-like 16 130 - -
Aip03g02160 683 MobiDBLite consensus disorder prediction 151 167 - -
Aip03g02160 683 Pfam Response regulator receiver domain 16 124 IPR001789 GO:0000160
Aip03g02160 683 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 664 IPR045279 GO:0009736
Aip03g02160 683 SMART REC_2 14 126 IPR001789 GO:0000160
Aip03g02160 683 PIRSF RR_ARR_type-B 1 683 IPR017053 GO:0003677|GO:0003700|GO:0009736
Aip03g02160 683 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 199 258 IPR017930 -
Aip03g02160 683 SUPERFAMILY Homeodomain-like 200 259 IPR009057 -
Aip03g02160 683 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 664 - -
Aip03g02160 683 Pfam Myb-like DNA-binding domain 204 254 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02160 Aip-Chr3 32632300 32637203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02160 1 380 Response Regulator Gene Family AT2G25180 57.179 7.34e-129 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Aip03g02160 Response_reg 1.9e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02160 K14491 - gmx:100807822 1003.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g02160 03 32632300 32637203 Aip03g02160 03 32632300 32637203 ECH