Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02123 ATGAGGTTGTGTAGCGATCTCTTTCAAAGCTGCTTCCCCGGAACTTCTTCTGGCACATCTCCAAATGATTCAATTGAGATAAAGTGGCCAATCTTATCCTACCGGGAACTTGCAAAAGTTACAAATAATTTTGACCAATGTAATATGCTTGGAAAGATAGGCTTGGAGAAAGTTTACCATGGCAAAAAGAATGGGCGTGAGGTTGCAATTCAAAGATATTCCAATAATGAGATGCACATATTCCAGCAGTTCCTCTATGAAGATTTGATCTCAAATATCTTACCTCATAAGAATCTGGTGTCATTTCATGGCTGTGCCTTTCATCATAAGGAGTTCCTGCTAGCACATGAATACCTCTCAAATGGCACTCTTGCTTCTTATCTTCAACTTGGAATGTCACACAGCAGCACACTACATTGGCTCACTAGATTAGACATTGCAATTGATGCTGCAAATGCATTGAGCTATCTTCATTATCATGGCATCGTCCATCGCAATGTAAAATCCCGCAATATTCTGCTAGACAAGAACCTTTGTGCTAAACTTGGTGGCTTACATTTGTCAAGGAAATTTCCAGAAGGAGTTTCAATCAATGATACCTATGTTACAAGTGATGTAGTAGGGACATGTGGTTACATAGACCCAGAATATGTATCAAATGGCAGGGTTGGTGCCACAGTTGATGTTTACAGCTTTGGAGTGGTTTTGTGTGAGCTTATATCATCCAAACTCGCTAAGTATTGGGAAGGTTGCGAGGAAGAGAGTATCGCTACAATTTTAAGCAAAAAAATTGGAAACCAAGATATAAACAAGGTGTTGGATCCAAGACTTGGCTTCCAATCAGACCATAAAATCAAGCAGATGATAACTGCTGTAGCAGAGCTTGCACTTGAGTGCATGACATCTCCACAAGAACTAAGGCCAAACATGGAACAAGTGCTAGAGATCCTCAATGATATAAAACAAGAGAGATTTGAAGCAAACTCAGAAAAAGCTTTTAAAATCTTCCACCATGCTGAACTTGAAGAAGCAACTAAACATTTTGACACTTGCCTTGGAAAGGGAGGGTTTGCCACTGTCTACTATGGAAAACTTAAGGATGGGCGCGAAATTGCAGTAAAACGTTTCCACAACGAGACAGACAAGTCCATCAAGCAATTCATGAAAGAAATAGAGATCTTAAGTTTATTGCAGCATAAAAATTTGGTGTTACTTTATGGCTGCAGCTCTCCTCACAGCAAGAACCATCTTCTAGTATATGAGTACATCTCCAACGGCACCCTTTCTAAACATCTTCAAGGACCTTCCAGTGAAACGTTATCATGGCTTACTAGATTGAACATTGCCATTGAAACTGCAACTGCATTAGTATATCTTCATGATTCAGGCATCATCCATCGTGATGTAAAAGGAAGCAACATTCTCTTGGATGAAAACTTGACTGTTAAGGTTGCGGATTTTGGACTCTCAAGGTCACTTCCGAGTTCTGTAACACATGTTTCAACCATACCAGTGGGAACTCACGCTTACATAGATCCAGATTACTATGAATCTGGAAGAGTCAGTGATAGAAGCGATGTCTACAGCTTTGGCGTGGTCTTGTTTGAGCTCATATCATCGAAACCACCTAGCTTGTTGGATGATGGAGAGAGTGTTACTCTAGCCAAGTTCGGAATCACTAAGATGTTAAACAATGCAATGGAGGAGCTGGTGGATCCAATTTTCAGGTTTGGTTCAGACCAAAAGTTGATGGAAATGATAGCAGCTGTGGCAGAGTTAGCATTTCAGTGTGTGCAGTGTCCTAAAGATCTTAGACCTTCTATGAAACAGGTGCTGGAGACCCTAGAAGGAATAAAGAAGGGAACATGGGGATTCAACCAAATAACATAG 1890 0.4048 MRLCSDLFQSCFPGTSSGTSPNDSIEIKWPILSYRELAKVTNNFDQCNMLGKIGLEKVYHGKKNGREVAIQRYSNNEMHIFQQFLYEDLISNILPHKNLVSFHGCAFHHKEFLLAHEYLSNGTLASYLQLGMSHSSTLHWLTRLDIAIDAANALSYLHYHGIVHRNVKSRNILLDKNLCAKLGGLHLSRKFPEGVSINDTYVTSDVVGTCGYIDPEYVSNGRVGATVDVYSFGVVLCELISSKLAKYWEGCEEESIATILSKKIGNQDINKVLDPRLGFQSDHKIKQMITAVAELALECMTSPQELRPNMEQVLEILNDIKQERFEANSEKAFKIFHHAELEEATKHFDTCLGKGGFATVYYGKLKDGREIAVKRFHNETDKSIKQFMKEIEILSLLQHKNLVLLYGCSSPHSKNHLLVYEYISNGTLSKHLQGPSSETLSWLTRLNIAIETATALVYLHDSGIIHRDVKGSNILLDENLTVKVADFGLSRSLPSSVTHVSTIPVGTHAYIDPDYYESGRVSDRSDVYSFGVVLFELISSKPPSLLDDGESVTLAKFGITKMLNNAMEELVDPIFRFGSDQKLMEMIAAVAELAFQCVQCPKDLRPSMKQVLETLEGIKKGTWGFNQIT 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02123 629 Pfam Protein tyrosine and serine/threonine kinase 59 317 IPR001245 GO:0004672|GO:0006468
Aip03g02123 629 Pfam Protein tyrosine and serine/threonine kinase 348 615 IPR001245 GO:0004672|GO:0006468
Aip03g02123 629 Gene3D Phosphorylase Kinase; domain 1 20 118 - -
Aip03g02123 629 Gene3D Transferase(Phosphotransferase) domain 1 423 623 - -
Aip03g02123 629 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Aip03g02123 629 SUPERFAMILY Protein kinase-like (PK-like) 18 320 IPR011009 -
Aip03g02123 629 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 29 629 IPR044652 -
Aip03g02123 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Aip03g02123 629 SMART serkin_6 44 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g02123 629 SMART serkin_6 346 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g02123 629 SUPERFAMILY Protein kinase-like (PK-like) 331 619 IPR011009 -
Aip03g02123 629 ProSiteProfiles Protein kinase domain profile. 44 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g02123 629 PRINTS Tyrosine kinase catalytic domain signature 116 129 IPR001245 GO:0004672|GO:0006468
Aip03g02123 629 PRINTS Tyrosine kinase catalytic domain signature 156 174 IPR001245 GO:0004672|GO:0006468
Aip03g02123 629 PRINTS Tyrosine kinase catalytic domain signature 227 249 IPR001245 GO:0004672|GO:0006468
Aip03g02123 629 Gene3D Phosphorylase Kinase; domain 1 332 422 - -
Aip03g02123 629 ProSiteProfiles Protein kinase domain profile. 346 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip03g02123 629 Gene3D Transferase(Phosphotransferase) domain 1 119 331 - -
Aip03g02123 629 PANTHER TYROSINE KINASE FAMILY PROTEIN 29 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02123 Aip-Chr3 31195764 31200098 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02123 335 619 Receptor kinase-like Gene Family AT1G25390 54.983 5.58e-98 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Aip03g02123 PK_Tyr_Ser-Thr 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02123 - - gmx:100801413 839.721