Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02115 ATGTCTTATATGCGGAACAAGCCTTATTGGAGGTGTTACTTTCCAAATACTCAAGCAATAATCTATGTTGTTGATTCAAGTGATACCGATAGGCTTGTGAAAGCTAAGGAAGAGTTCCATGCTATTCTGGAGGCTGACTCTGAAGTTCACATACACTGGAAAGGTGCTACTGAGATTGTCCTAGCCTACTGTACACGGTACATTGATGCAAATGACCAGTTGGTAGACATGGATGAGGAAAAGGATCGTTGTCGACCTGGAGTCAAAGATTCAGTGGAGCTTTGCCAAAAATATGGGGTTAAGGTTGTGAGACGGGGACGTTCTGTGTATGCAAATATTCAAAAATTTATCCAGTTTCAGCTTACAGTAAATGTAGCAGCTCTTGTTATAAATGTTGTTGCTGCTGTTTCCTCTGGTGATCTCCCACTGAATGCAGTGCAGATTTTGTGGGTGAATCTTACCATGGATACTTTGGGAGAACTAGCATTGGCAACTGAACCACCAACTGACCATCTTATGGATTGGGCCCGAAGAGTAGTAAGCAACTCTTCATCTGAAGCCGAATACCGAGCCTTAGCAAATGCAACATGTGAAGGCCTCTGGTTACTTCGACTACTGCAAGTGTTTGGAGTTAATCATGAAGAACCTCTCACCCTCTATAGTGATAGCCAATCTGCCTTGGCCATGGCAGTCAACCCTGTTCTGCACGAGCGTACGAAACACATAGAAGCGGACTGCCATATAGTTCGTGACAAAGCTCATGAGGGTATCATCAAACTGCTTCCTGTGACCTCTAGCAATCAAATAGCTGATCTATTAACTAAAACACTAGCTCCGAGGCTCTTCAATTCATGCTGTTCCAAACTAGGATTGTTGGACATTCACTGTCCTAACACTCCTAGTTTGAGGGGGATGTTAGCTGATATAGGTGCCAGCTCAGCTTATATATTTATAATAAAGAAGTTAGTTAGAGACTAG 978 0.4294 MSYMRNKPYWRCYFPNTQAIIYVVDSSDTDRLVKAKEEFHAILEADSEVHIHWKGATEIVLAYCTRYIDANDQLVDMDEEKDRCRPGVKDSVELCQKYGVKVVRRGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDLPLNAVQILWVNLTMDTLGELALATEPPTDHLMDWARRVVSNSSSEAEYRALANATCEGLWLLRLLQVFGVNHEEPLTLYSDSQSALAMAVNPVLHERTKHIEADCHIVRDKAHEGIIKLLPVTSSNQIADLLTKTLAPRLFNSCCSKLGLLDIHCPNTPSLRGMLADIGASSAYIFIIKKLVRD 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02115 325 CDD RNase_HI_RT_Ty1 178 279 - -
Aip03g02115 325 Pfam Cation transporting ATPase, C-terminus 141 178 IPR006068 -
Aip03g02115 325 Gene3D - 93 255 - -
Aip03g02115 325 Gene3D - 3 63 IPR027417 -
Aip03g02115 325 PANTHER CALCIUM-TRANSPORTING ATPASE 100 175 - -
Aip03g02115 325 PANTHER CATION TRANSPORTING ATPASE 100 175 - -
Aip03g02115 325 PANTHER CATION TRANSPORTING ATPASE 38 80 - -
Aip03g02115 325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 46 IPR027417 -
Aip03g02115 325 Pfam ADP-ribosylation factor family 7 48 IPR006689 GO:0003924|GO:0005525
Aip03g02115 325 PANTHER CALCIUM-TRANSPORTING ATPASE 38 80 - -
Aip03g02115 325 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 46 81 IPR023299 GO:0000166
Aip03g02115 325 SUPERFAMILY Calcium ATPase, transmembrane domain M 106 175 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02115 Aip-Chr3 31074315 31078256 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02115 100 173 Primary Pumps ATPases AT5G57110 90.541 1.64e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02115 - - adu:107494542 181.03