Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02106 ATGGCGCCTCTTATTATGATTTCATCATGTTTCGTTTGGAATCTCTTTATGGTTCTTATCGGAGTAAGTGTTAGTGTCCCTGTTGAAGCTAAATCTTGGCTTAAAGCTCATGCAACCTTCTACGGGGCCAATCAAAGTCCCATCAGCCTCGGGGGAGCTTGTGGTTATGACAACACCTTTCATGCTGGGTTTGGTGTGAACACTGCGGCAGTGAGCACCATGCTCTTCAGAGGTGGTGAGGCTTGTGGAGCATGCTACCAAGTGATTTGCGACTACCGGGTCGACCCAAAATGGTGCCTCCGGCGACGAAGTGTGACCGTAACTGCCACCAATTTTTGCCCTCCGAACAACCAGGGAGGGTGGTGTGATCCACCTCACCATCACTTTGATATGTCCGCTCCGTCTTTCTTTCGCATTGCAAGACAAGGCAGTGAAGGCATTGTTCCCGTTCTCTATACAAGGGTGCCATGCAAAAGAAGAGGTGGAGTGAGATTCACGTTGAGGGGGCAATCCAATTTCAACATGGTGATGATATCCAACGTGGGAGGCAGCGGGGACGTGAAGGCCGTCTCGATCAAAGGATCGAGAGGCCGCTCGTCTTGGCTGCCTATGCACCGCAACTGGGGAGCCAACTGGCAAAGCAGTGTGGATCTCCGGAACCAGAGGCTCTCATTCAAGCTAACATTGGCAGATGGGAATACACTGCAGTTTCTCAATGTTGTTCCTTCTAGTTGGAGGGAGGTTGATGTTGGCCCCGATGGTAAGATCCGTTACGAGGATTTCATCGCCAGAATGGTTGCTAAGTTTGAGTTGATAGAGTTTATCAGTTTACTCTGCATCTCATCTCACTCTCACTCTCCAGCTATATTTTCTTCCATGTTATCATTATTTTTCGAAAATCTCAATTGGAGGAAAATGGTTATCAGCTACTATTTCTGA 939 0.4835 MAPLIMISSCFVWNLFMVLIGVSVSVPVEAKSWLKAHATFYGANQSPISLGGACGYDNTFHAGFGVNTAAVSTMLFRGGEACGACYQVICDYRVDPKWCLRRRSVTVTATNFCPPNNQGGWCDPPHHHFDMSAPSFFRIARQGSEGIVPVLYTRVPCKRRGGVRFTLRGQSNFNMVMISNVGGSGDVKAVSIKGSRGRSSWLPMHRNWGANWQSSVDLRNQRLSFKLTLADGNTLQFLNVVPSSWREVDVGPDGKIRYEDFIARMVAKFELIEFISLLCISSHSHSPAIFSSMLSLFFENLNWRKMVISYYF 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02106 312 Pfam Lytic transglycolase 68 152 IPR009009 -
Aip03g02106 312 Gene3D - 21 158 IPR036908 -
Aip03g02106 312 SUPERFAMILY PHL pollen allergen 159 246 IPR036749 -
Aip03g02106 312 SMART dpbb_1 68 152 IPR007112 -
Aip03g02106 312 Pfam Expansin C-terminal domain 163 242 IPR007117 -
Aip03g02106 312 Gene3D - 162 250 IPR036749 -
Aip03g02106 312 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Aip03g02106 312 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Aip03g02106 312 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Aip03g02106 312 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Aip03g02106 312 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Aip03g02106 312 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Aip03g02106 312 PANTHER EXPANSIN-A15 7 246 IPR002963 GO:0009664
Aip03g02106 312 SUPERFAMILY Barwin-like endoglucanases 32 180 IPR036908 -
Aip03g02106 312 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 162 IPR007112 -
Aip03g02106 312 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 246 IPR007117 -
Aip03g02106 312 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Aip03g02106 312 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Aip03g02106 312 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Aip03g02106 312 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Aip03g02106 312 PRINTS Expansin signature 92 103 IPR002963 GO:0009664
Aip03g02106 312 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Aip03g02106 312 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Aip03g02106 312 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Aip03g02106 312 PANTHER EXPANSIN-A12 7 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02106 Aip-Chr3 30844617 30849340 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02106 17 245 Expansin Gene Family AT3G15370 60.618 9.92e-112 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02106 - - ahf:112735861 520.776