LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip03g02081	ATGGCTTCTAATCTTCCAACTATCGCTGCCTCAACGGCAAGGTCCGCTGCCACGACGACGTCGTTTCAGGAAAAACATTACCGTTCGGTCTTCGAGCTCTCACCTAGCGTCTTCGACTCTTGCTACTTTCTACCTTCTACTCACTCTTCGATTTACGAGCCCAACGACAATGATCGTCGCAACGCAGGCCTTGAAACGCCCTCAAACAACGTCGTCGCCGATGGTCCCCAAGACACCGTCGTTTCAGCGCCTAGGTGGACGTGCAACACCTGTAAGGCCCAATTCGATTCCCTCCAAGACCAGCGTTCGCATTTCAAATCTGATATTCATCGATTCAATGTGAAGCTGACAGTTGCGGGAAAGAATATTGTTAAGGAAGAGGATTTTGAGGTGTTGACATCTGAATTTGTCAAAGACTATGATGTTTCAAGCATATCAGGATCAGAGAGTGACAGTGACAGTGAAAATGAGTCTCAAAATCGCAATGAAGTGCGTGACAAATCAAGAGAAATTCTTAAACAAAATCTATTTGTTGGTCTTCAATCAGGTCAAAGAGTTTCTCTCTGGAAGTGCTTGATTATGAATATGAGTGATGAGAATGGAAGTGCAGAGAACGAAGTGTGTGAGAGGTTGAAATCTCTGACTCTTGAGCCCAGGGATAATAGTCATTTGCGAATCGTACTGCTTGCATCTGGTGGACACTTTGCTGGTTGTGTCTTTGATGGTGATGCAGTTGTGGCTCACAAGACCTTTCACAGATATGTTGTGAGGGCCAAGGCTGGAAAGAAACAATCATCAAAAGATGCTTCTGGAAGGGCTGCACATTCTGCTGGTGCTTCACTTCGTCGTCATAATGAACTTGCATTAAAAAAGGCAGAAAAAGAAGCCAAGAGAAAAGCCAGAGCAAAAGAGTTAAAGAAACTAAAGAAAGCCAAAGAAAAGAGGGCACAGGCAGAAGCTGCGTTGCTTAAGAATGACTCGAAGGCTGCAGAGAAGCAAATGACTGCCCCAGCTTCTTCTAAGGGACAAGCACAATCCAAAAGTGGTGTGAAATTATCTAAAGAGGAGGAAATAAGAAGAGCGCAGGCTGAAGAAAGGGAAAAGAGAGCAGCTGCCGCAGAGAGAAGAATAGCTGCCCTCAAAATTCAAGAGAACTGTTCAACCTCCACACATGCCATTTCAGAACCTAAAGGAGGATTAGCTGGTGAAATTTACTGTTCCTGTTGTAATTCATCACTTGCTGGTAAAGTTCCCTTCCACCGCTATAATTATAATTACTGCAGCACATCATGCATGCACGTACACAGGGAGTTCCTAGAAGATGGATGA	1329	0.4462	MASNLPTIAASTARSAATTTSFQEKHYRSVFELSPSVFDSCYFLPSTHSSIYEPNDNDRRNAGLETPSNNVVADGPQDTVVSAPRWTCNTCKAQFDSLQDQRSHFKSDIHRFNVKLTVAGKNIVKEEDFEVLTSEFVKDYDVSSISGSESDSDSENESQNRNEVRDKSREILKQNLFVGLQSGQRVSLWKCLIMNMSDENGSAENEVCERLKSLTLEPRDNSHLRIVLLASGGHFAGCVFDGDAVVAHKTFHRYVVRAKAGKKQSSKDASGRAAHSAGASLRRHNELALKKAEKEAKRKARAKELKKLKKAKEKRAQAEAALLKNDSKAAEKQMTAPASSKGQAQSKSGVKLSKEEEIRRAQAEEREKRAAAAERRIAALKIQENCSTSTHAISEPKGGLAGEIYCSCCNSSLAGKVPFHRYNYNYCSTSCMHVHREFLEDG	442

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip03g02081	442	Pfam	Bacteroidetes VLRF1 release factor	226	291	IPR041175	-
	Aip03g02081	442	MobiDBLite	consensus disorder prediction	143	166	-	-
	Aip03g02081	442	MobiDBLite	consensus disorder prediction	332	349	-	-
	Aip03g02081	442	SUPERFAMILY	beta-beta-alpha zinc fingers	83	118	IPR036236	-
	Aip03g02081	442	PANTHER	ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1	290	437	-	-
	Aip03g02081	442	PANTHER	ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1	23	291	-	-
	Aip03g02081	442	Coils	Coil	354	383	-	-
	Aip03g02081	442	Pfam	Vms1-associating treble clef domain	405	437	IPR041540	-
	Aip03g02081	442	Coils	Coil	289	333	-	-
	Aip03g02081	442	MobiDBLite	consensus disorder prediction	284	300	-	-
	Aip03g02081	442	MobiDBLite	consensus disorder prediction	259	358	-	-
	Aip03g02081	442	ProSitePatterns	Zinc finger C2H2 type domain signature.	88	110	IPR013087	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip03g02081	25	295	C2H2 Transcription Factor Family	AT1G01930	56.250	9.46e-91	285

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip03g02081	K26089		-	aip:107632759	746.888