Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02054 ATGCTTTGTGGGTTTGCTGCAGTTTTGGTGAAGCGTTTTATGAGTAATAGATTTCTTGGAGAAGTTGTATTAGCAGAGGCAGAGCGGTTTTATGTTGCAATGTCTTCTTGTAGCAGAACGATCCCTGGATTGGATGCTTGTGGGGAAGAGAATTTTGATGGCTTCAGGGATACCGGAGATATCGATGCAACGGAATCACTGCTGGACATTGGGATGAAAACAGAGGAAGAAGAGTTGGGGGAAGAATCACCCAATGAAGAGCACTGTGAGCAGAACAGCAATGCTGAACATGTAGTGTTTGGTCGTGCACATATATTGGAGATGGAGTTCGCTAACCCGGATGAAGTGTGTCGTTTTTATGAGCAATATAGTCGAGCAAAGGGTTTTGGCATGCGACAAGGGAAGAAACTGAAGAATAGAAATGGTGAAATCGTGCGATACACGTATTTGTGCAACAGAGAAGGATTTAGAGATAGAACAGAGGAAGGGGAAGAATCACCCAATGAAGAGCACTGTGAGCAGAACAGCAATGCTGAACATGTAGTGTTTGGTCGTGCACATATATTGGAGATGGAGTTCGCTAACCCGGATGAAGTGTGTCGTTTTTATGAGCAATATGAGCAATATAGTGGTTTTGGCATGCGACAAGGGAAGAAACTGAAGAATAGAAATGGTGAAATCGTGCGATACACGTATTTGTGCAACAGAGAAGGATTTAGAGATAGAAAATGGCTTGAGATGCAGGATTGGAAGAGGGAGCACAAGGTTTTTACCTGCTGTGGATGTCAGGTAGAGATGAGGATAAAGCAAAAAGCTGAAAGTAGCAATTGGTATGTGTGTCGTTTTGTTGATGAGCATAACCACGACCTTCTCCTGGCAAAGTTTGTGTCATACCTGCCAGCATATAGGAAATTATCAGATGTTGATAGAGCCCACATGGACAGTTTAAGGCAGGTTGGAATTTCAATTCCCAAAATTTACGAGTCTATTACTGCTCAGGCTGGGGGTTTTAACCTAGTTACGTTCACAAAGAGAGATATGTATAATGTGGTTAGGCGGCAACGTGCAATGCAAAGCAGCGATGTGAATGCCGTGTTACGGTATTTCAATGTTTGTGCCAGGAGAGATGGTAATATGTATTAG 1143 0.4296 MLCGFAAVLVKRFMSNRFLGEVVLAEAERFYVAMSSCSRTIPGLDACGEENFDGFRDTGDIDATESLLDIGMKTEEEELGEESPNEEHCEQNSNAEHVVFGRAHILEMEFANPDEVCRFYEQYSRAKGFGMRQGKKLKNRNGEIVRYTYLCNREGFRDRTEEGEESPNEEHCEQNSNAEHVVFGRAHILEMEFANPDEVCRFYEQYEQYSGFGMRQGKKLKNRNGEIVRYTYLCNREGFRDRKWLEMQDWKREHKVFTCCGCQVEMRIKQKAESSNWYVCRFVDEHNHDLLLAKFVSYLPAYRKLSDVDRAHMDSLRQVGISIPKIYESITAQAGGFNLVTFTKRDMYNVVRRQRAMQSSDVNAVLRYFNVCARRDGNMY 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02054 380 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 73 170 - -
Aip03g02054 380 Pfam FAR1 DNA-binding domain 118 168 IPR004330 -
Aip03g02054 380 Pfam FAR1 DNA-binding domain 201 291 IPR004330 -
Aip03g02054 380 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 181 303 - -
Aip03g02054 380 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 73 170 - -
Aip03g02054 380 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 181 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02054 Aip-Chr3 29481440 29482680 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip03g02054 FAR1 3.9e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02054 - - ahf:112795186 300.441