Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02016 ATGTTGATAACGGTCAGGGATGCTTCCTTTTCTTCTCCACTCTGTTCTTGGCACCGTCGTTTCAGCACAAAACTCAAATATTCAATTTTCCGAGCGAGTTTTTCTGTCCAGAGGACACCCAACACTACCCTCACATGGAATCCCAGACATGTCTCCACCTGCTATGATGCAGCGAATTTCGATCCCTTGGGTATTAACCCGGATTTATCTTCCTGGTTAAATTCTACTTGGGAGAAAGTAGTCTCCTTGTTTTCGCAAACTTTTGAGAGTGCTTCAAGTACAGACAAGGAAAAGCCTAATTCTTCCCGAGGAATAGCAGCTGCTATAGAGGATAGTTCAATTGATTTTGGAGACTTCTTTAAAGGTCCATTGCCAGGAAAGTTTCTCAAGCTTTTAGGGTTTCTTGCCTTGTCACGTCTTGGTGTGTATATTCCTCTAGGTGGGGTTAATAGGGAGGCTTTTGTTGGAAATTTAGATCAGAATAGTTTATTAAGCACTCTGGACTCGTTTTCTGGAGGCGGTATTGGTAGGCTTGGGATATGTTCCCTTGGTATTGTTCCCTTCATCAATGCACAAATTGTTTTCCAGCTTCTTGCACAGGTATATCCAAAGTTGCAAGATCTTCAGAAAAGAGAAGGTGAGGCTGGAAGAAAGAAAGTTCTTCAATACACTCGATATGCCTCAGTTGGATTTGCAATTGTACAGGCAATTGGCCAAGTCCTCTTTTTACGTCTTTATGTGAATGACTTTAGTTCCGAGTGGGTTCTTTCATCTATTATCTTGTTGACTCTTGGCTCTGTGTTTACAACATACATCGGTGAACGAATCACAGATCTAAAACTCGGCAATGGCACCTCTCTTTTGATATTTACAAACATTATCTCCTACTTGCCAGCTTCTTTTGGTCGAACAATTGCACAGGCATTTAACGATGCTAATTATATTGGACTTGCTACCATCATTGTGTCCTTCTTTTTGTTGGTAGTTGGTATTGTCTATGTTCAGGAAGCAGAGAGAAAAATTCCTCTTAACTATGCTTCAAGATTCACTAGCAAAACCAGAGGACTTGAAAAATCTGCCTACTTACCCTTTAAGGTAAATAGTTCTGGGGTAATGCCCATCATATTCTCTACATCATCATTAGCTCTTCCCGGTACTTTAGCACGCTTCACTGGTTTGAATGCATTGAAGCAAACTGCAGTAGCTTTGAACCCAGGGGGCTCCTTCTATGTTCTATTTAACATACTTTTGATTGCCTTCTTCAATTACTATTACACCTTCCTACAATTGGATCCTGATGATGTGAGTGAGCAATTGAAACGACAAGGTGCTTCAATTCCACTTGTCAGACCTGGCAGAAGTACAGCTGCATTTATCAAAACAGTTCTTAGTCGAATATCAGTTCTGGGTTCAACGTTTCTGGCTATTTTGGCTGCTGGTCCAGCAGTTGTTGAGCAGACAACACACTTGACTGCATTCAGGGGATTTGCAGGAACGTCGATTCTTATTCTTGTTGGTTGCGCAACAGATACGGCTAGAAAAGTTCAAGCTGAGATCATATCTCAGAAGTACAAGAACATAGAATTCTATGATTTCGACAAGTACTGA 1608 0.4111 MLITVRDASFSSPLCSWHRRFSTKLKYSIFRASFSVQRTPNTTLTWNPRHVSTCYDAANFDPLGINPDLSSWLNSTWEKVVSLFSQTFESASSTDKEKPNSSRGIAAAIEDSSIDFGDFFKGPLPGKFLKLLGFLALSRLGVYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQVYPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLFLRLYVNDFSSEWVLSSIILLTLGSVFTTYIGERITDLKLGNGTSLLIFTNIISYLPASFGRTIAQAFNDANYIGLATIIVSFFLLVVGIVYVQEAERKIPLNYASRFTSKTRGLEKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLNALKQTAVALNPGGSFYVLFNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGRSTAAFIKTVLSRISVLGSTFLAILAAGPAVVEQTTHLTAFRGFAGTSILILVGCATDTARKVQAEIISQKYKNIEFYDFDKY 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02016 535 ProSitePatterns Protein secY signature 2. 271 288 IPR030659 -
Aip03g02016 535 Pfam SecY 180 511 IPR002208 GO:0015031|GO:0016020
Aip03g02016 535 SUPERFAMILY Preprotein translocase SecY subunit 120 518 IPR023201 -
Aip03g02016 535 TIGRFAM 3a0501s007: preprotein translocase, SecY subunit 127 524 IPR002208 GO:0015031|GO:0016020
Aip03g02016 535 ProSitePatterns Protein secY signature 1. 179 198 IPR030659 -
Aip03g02016 535 PRINTS Preprotein translocase SecY subunit signature 128 146 - -
Aip03g02016 535 PRINTS Preprotein translocase SecY subunit signature 178 198 - -
Aip03g02016 535 PRINTS Preprotein translocase SecY subunit signature 220 243 - -
Aip03g02016 535 PRINTS Preprotein translocase SecY subunit signature 252 277 - -
Aip03g02016 535 PRINTS Preprotein translocase SecY subunit signature 278 301 - -
Aip03g02016 535 PRINTS Preprotein translocase SecY subunit signature 369 388 - -
Aip03g02016 535 PRINTS Preprotein translocase SecY subunit signature 408 430 - -
Aip03g02016 535 PRINTS Preprotein translocase SecY subunit signature 463 481 - -
Aip03g02016 535 PRINTS Preprotein translocase SecY subunit signature 497 515 - -
Aip03g02016 535 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 47 533 IPR002208 GO:0015031|GO:0016020
Aip03g02016 535 Hamap Protein translocase subunit SecY [secY]. 116 528 IPR026593 -
Aip03g02016 535 Gene3D SecY subunit domain 119 524 IPR023201 -
Aip03g02016 535 PANTHER PREPROTEIN TRANSLOCASE SUBUNIT SCY1, CHLOROPLASTIC 47 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02016 Aip-Chr3 28777905 28782292 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02016 26 535 Chloroplast and Mitochondria Gene Families AT2G18710 81.445 0.0 835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02016 K10956 - gmx:100810430 875.93