Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02009 ATGGGAGTTCCAGAGAAGGATCCTCTCTCTCAATTGAGCTTACCTCCTGGTTTTAGATTTTATCCCACAGATGAGGAGCTTCTTGTTCAGTACCTATGTCGCAAGGTTGCTGGCAACCATTTCTCACTTCCTATCATCGCGGAAATCGATTTGTATAAATTCGACCCTTGGATCCTCCCAGGTAAAGCAATATTTGGGGAGAAAGAATGGTACTTTTTCAGCCCCAGGGATAGAAAGTATCCGAACGGTTCGCGACCGAACAGGGTTGCTGGCTCTGGGTACTGGAAAGCCACAGGAACAGATAAAGTAATCACTACCGAAGGCAGAAAAGTTGGAATCAAGAAAGCACTTGTTTTCTACATTGGCAAAGCACCCAAAGGCACCAAAACAAACTGGATCATGCACGAGTACCGTCTCCTCAACGGTTCTCAAAAGAGCCTCGGCAGCACCAAGCTAGATGATTGGGTTTTGTGTCGGATATACAAGAAGAACTTGAGCTCATCGCAAAAAGTCAATATGCCAAGCTTTACGAGCAAAGAATGGAGCAATGGATCGTCGCCTTCTTCATCGTCTCACATCGACGACATGCTCGAATTGCCGGAGATCGACGACCGGTGCTTCGCCTTACCGCGGGTTAACTCACTGCAGCACGAAGAAAAGCTCACCCTTGGCGGCACAGGCAATAATTTCCCGGACTGGGTCAACTCGGGGGGTCTCGACTCGGTCCCTGAGTTTGGGAGCCAATCTCAGGGGATGACAAGTTACGATGGAAATGACCTATATGTCCCCTCCGCGTCACAGTTCTGCCACGTCAACACAATGGTTGTACCGGGTAACCCGACGGAGGAGGAAGTCCAGAGCGGCATCAGGACCCAGCGGATTGATGAGAATTTCGGGTTATTTCAACAGAATTCGAATGTATTCACCCACCGGTATTTGTCGAGTTCGGGTGACTCATTCGGATTCGGATACCCGAATCAGCAATTTGGATTCGGATTCAGAGAATGA 1008 0.4881 MGVPEKDPLSQLSLPPGFRFYPTDEELLVQYLCRKVAGNHFSLPIIAEIDLYKFDPWILPGKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITTEGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRLLNGSQKSLGSTKLDDWVLCRIYKKNLSSSQKVNMPSFTSKEWSNGSSPSSSSHIDDMLELPEIDDRCFALPRVNSLQHEEKLTLGGTGNNFPDWVNSGGLDSVPEFGSQSQGMTSYDGNDLYVPSASQFCHVNTMVVPGNPTEEEVQSGIRTQRIDENFGLFQQNSNVFTHRYLSSSGDSFGFGYPNQQFGFGFRE 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02009 335 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Aip03g02009 335 ProSiteProfiles NAC domain profile. 14 163 IPR003441 GO:0003677|GO:0006355
Aip03g02009 335 SUPERFAMILY NAC domain 10 164 IPR036093 GO:0003677|GO:0006355
Aip03g02009 335 PANTHER NAC TRANSCRIPTION FACTOR 56 1 306 - -
Aip03g02009 335 MobiDBLite consensus disorder prediction 174 193 - -
Aip03g02009 335 Gene3D NAC domain 23 167 IPR036093 GO:0003677|GO:0006355
Aip03g02009 335 PANTHER NAC DOMAIN-CONTAINING PROTEIN 55 1 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02009 Aip-Chr3 28533011 28534653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02009 1 331 NAC Transcription Factor Family AT4G27410 56.695 6.44e-116 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip03g02009 NAM 4.9e-37 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g02009 03 28533011 28534653 Aip03g02009 03 28533011 28534653 ECH