Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g02002 atggcGGAGCTCGGCCACAAGTTCGACGGCCAGACCATCGAGTGGCTCCTCTGCCAGGTTGAGCCCTCAATCATCGCCGCCACCGGAACCGGAACCACTCCCGCCAGCTTCTCCTCCGTTTCCGTCTCCGTACGCGGCGGTGCTGGCTCTCTCTCTTCTCCTTCCTCAACCTCTGTAGCGTCTTCGCTCAACCACAAGCCCTTGCTCGCTCCCACTCCCTTCATACTCGGCAAGCGCATACGCACTGACGATGACGCTTCCGCCAAGGATGACGGCGTCTTTGTGGGTCTCGCTATGGGGTCCTTAGTGGGTCCCGGAGCTCCCGCAAGGCTCTGGGCCCTCCCGGCCAGGCTCGATTTCTGTCAAATTTAG 372 0.6075 MAELGHKFDGQTIEWLLCQVEPSIIAATGTGTTPASFSSVSVSVRGGAGSLSSPSSTSVASSLNHKPLLAPTPFILGKRIRTDDDASAKDDGVFVGLAMGSLVGPGAPARLWALPARLDFCQI 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g02002 123 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 3 123 - -
Aip03g02002 123 Pfam TCP family transcription factor 3 61 IPR017887 -
Aip03g02002 123 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 123 IPR005333 GO:0003700
Aip03g02002 123 ProSiteProfiles TCP domain profile. 1 27 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g02002 Aip-Chr3 28364668 28365039 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g02002 3 123 TCP Transcription Factor Family AT5G23280 54.032 4.40e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Aip03g02002 TCP 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g02002 K16221 - aip:107646651 147.517