Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01998 ATGTCTCACCAGGGCGAATCATCCGACTCGAAATCGGGGAAGAAGGACTTCTCCACCGCGATTCTCGAACGCAAGAAGTTGCCGAACAGATTGGTCGTCGATGAAGCCGTCGACGATGATAATTCCGTCGTGGCCATGCACCCACAGACAATGGAAAAACTCCAACTTTTCAGCGGCGATACTATTCTCATCAAGGGAAAGAAACGGAAGGACACTATTTGCATTGCACTTGCTGATGACAATTGCGAGGAGCCCAAAATCAGGATGAACAAGGTTGTGAGATCCAATTTGAGGGTTCGTCTTGGTGATGTTGTGTCTGTGCATCAGTGCCATGATGTTAAGTATGGGAAACGAGTCCACATTCTGCCTATTGACGATACTGTCGAAGGTGTCACTGGAAATCTGTTTGATGCTTACTTGAAACCTTATTTCTTGGAGGCTTATCGCCCTGTCAGAAAAGGAGATTTATTCCTTGTCCAAGGAGGGATGAGAAGTGTAGAGTTCAAGGTCATTGAAACTGATCCTGGGGAGTATTGTGTGGTTGCTCCAGACACTGAAATTTTCTGTGAAGGTGAACCCGTGAAACGGGAGGATGAAGAAAGGCTGGATGAAGTTGGACACGATGATGTGGGTGGTGTTAGGAAGCAAATGGCACAGATCCGTGAGCTTGTAGAGCTTCCACTGAGACATCCTCAGCTTTTTAAGTCGATTGGTGTTAAGCCACCCAAGGGAATTTTGCTCTATGGACCCCCTGGCTCTGGTAAGACACTAATAGCAAGAGCTGTTGCTAATGAAACCGGAGCTTTCTTCTTTTGTATTAATGGTCCAGAGATTATGTCCAAATTGGCCGGAGAGAGTGAAAGCAATCTCAGGAAAGCATTTGAAGAAGCAGAAAAGAATGCTCCATCCATCATATTTATTGATGAGATTGATTCGATTGCACCCAAGCGGGAGAAGACAAATGGTGAAGTTGAAAGGAGGATTGTTTCACAACTTTTGACTCTTATGGACGGATTGAAGTCTCATGCACATGTTATTGTTATTGGTGCAACAAATCATCCAAATAGCATTGACCCAGCATTAAGAAGGTTTGGTAGATTTGATAGAGAAATTGACATTGGTGTTCCTGATGAAGTCGGTCGACTTGAAGTCCTTCGCATACATACCAAGAACATGAAGCTTTCTGATGAGGTTGATTTGGAGAGAATATCAAAAGATACTCATGGGTATGTTGGTGCCGACCTTGCTGCTCTTTGCACTGAAGCTGCTCATACTGAGAGAGTGGTTAAAGACAAAGTCTTGGTGTTCAATTTTACTGATGTGGGAAAACTTCCCTCTCCTGTTCTTAACGGCGAGAGAGCCGTTGTGCTATTCTTCATCGCTCATATACTCTTCTCTCTCCCTTTCTCTCTCTTACTCTCCCATGGTGTCCCACTTTCTTTCCTTGCCCTTGCAGCCTCCTTCATTGAGATCAGCTACGACGCTGCCGCTTCTTCCTCTTCCCTCTTCTGCACCAGACGCGGTGCTTCTTCCGGAATCCTCCTCGGCGCCGTGACTCTCCCTGCTCTTCTACTCTCCAAGTTGACGCAATTATCAAGAGGATTCTCATCGGCACAAGTTAATCTTCAAGAGATTCACTATATGACATTGCAATACTGGGCAACATCTGCCACCAGCTTCGTGGTGCTCGTGTTCCTCAGTTTTGTTCTGTCGCACCGCACTCCTCTTTCGCGTAAGGATTGGGGTTTAGGGTTTGGCTTGTGCTTCTTGTTTTTGCAAGCTTCGCTGTGCTTTCTGGCACTTGCTTCCACCTCCTCCCAAAGTGGCTTGCAACTTGCATGCAAGCTGTCATGGGTCCTTGGTCATGGATTGGCAGCAGTGATGCTAATTCAGCATTTTCTTGGAACTTTTCCATCTTGTGCTTCCATTGGGGAAGCACTTTTGGTGACAGCTGGTATTGTTCTCTATTTTGGTGACATGCTGTTGCTTACTGTTATGAGGCTATGTGGACTACTGATGTCATCAGATTTGGTCACTGCAGAGTATGAAACTAGTCGAAGTGAGATAGGCATCATAATTCAGGGAGTGCTGCTTGGCCTTCTGCTATATCCAATACCTTTCAAATATATTCTTCGTGTATGGGAATGGTCCACAAATACAGCTTCTGCTGAGTCAAGAAGATACAGTGAGATTAGAAGATCGGTTATTTTTTTTTCTCTCTTTGTATTGGTCATGGTTGGGATTGTACCATTATGGATGCAGTTTGTGCATGAATTTCATCTGCATCCTATTCTCTGGGTCCTATCCTTTGTTTTATCAGATCCATTCAAAAGACTATCACTGTGTATCTATTGGGTTTGTGTAATATGTCTCTCTGTGTTATATGTCTATGACATCTCTAAGAACAGTAGAGTTGAGAGAATTCTTCTGCGGAAATACTACCATCTATTGGCTGTCTTGATGTTTGTACCTGCTCTTATCTTACAGCCAGAGTTTCTTGATCTGGGTTTTGGTGCAGCTCTGGCAGTTTTCTTGACGTTAGAAATTATTCGAATATGGAGAATCTGGCCTTTGGGACAACCAATTCATCAGTTTATGAATGCATTCACTGATCACCGGGATTCTGATTTTCTAATTCTCAGCCACTTCTCACTTTTACTTGGATGTGCACTTCCTATTTGGTTGTCTTCCGGTTACAATGATCGACCCCTTGCTCCTTTTGCGGGAATATTGAGTCTAGGAATTGGAGATACAATGGCATCATTAATTGGGCACAAGTATGGTGTTCTAAGGTGGAGTAAAACTGGCAAGAAAACAATTGAAGGTACTGCAGCTGGTATAACGTCTGTTCTAGCTTCTTGCTGGTTACTCCTTCTATTGTTAGCTTCAAGTGGACACATTTTCACCCAGAATTGGTTCTCGCTGCTTCTATCTGTGACTGTTAGTGGTTTGTTGGAGGCATACACAGCACAACTTGACAATGCATTCATACCACTATTTTTCTATAGCCTTCTATGCTTGTAG 3024 0.4392 MSHQGESSDSKSGKKDFSTAILERKKLPNRLVVDEAVDDDNSVVAMHPQTMEKLQLFSGDTILIKGKKRKDTICIALADDNCEEPKIRMNKVVRSNLRVRLGDVVSVHQCHDVKYGKRVHILPIDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVQGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKREDEERLDEVGHDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSHAHVIVIGATNHPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDEVDLERISKDTHGYVGADLAALCTEAAHTERVVKDKVLVFNFTDVGKLPSPVLNGERAVVLFFIAHILFSLPFSLLLSHGVPLSFLALAASFIEISYDAAASSSSLFCTRRGASSGILLGAVTLPALLLSKLTQLSRGFSSAQVNLQEIHYMTLQYWATSATSFVVLVFLSFVLSHRTPLSRKDWGLGFGLCFLFLQASLCFLALASTSSQSGLQLACKLSWVLGHGLAAVMLIQHFLGTFPSCASIGEALLVTAGIVLYFGDMLLLTVMRLCGLLMSSDLVTAEYETSRSEIGIIIQGVLLGLLLYPIPFKYILRVWEWSTNTASAESRRYSEIRRSVIFFSLFVLVMVGIVPLWMQFVHEFHLHPILWVLSFVLSDPFKRLSLCIYWVCVICLSVLYVYDISKNSRVERILLRKYYHLLAVLMFVPALILQPEFLDLGFGAALAVFLTLEIIRIWRIWPLGQPIHQFMNAFTDHRDSDFLILSHFSLLLGCALPIWLSSGYNDRPLAPFAGILSLGIGDTMASLIGHKYGVLRWSKTGKKTIEGTAAGITSVLASCWLLLLLLASSGHIFTQNWFSLLLSVTVSGLLEAYTAQLDNAFIPLFFYSLLCL 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01998 1007 Gene3D - 7 112 - -
Aip03g01998 1007 Pfam Cell division protein 48 (CDC48), N-terminal domain 30 111 IPR003338 -
Aip03g01998 1007 SUPERFAMILY Cdc48 domain 2-like 112 204 IPR029067 -
Aip03g01998 1007 Pfam Cell division protein 48 (CDC48), domain 2 132 195 IPR004201 -
Aip03g01998 1007 PANTHER AAA-FAMILY ATPASE 5 442 - -
Aip03g01998 1007 SMART CDC48_N_2 30 113 IPR003338 -
Aip03g01998 1007 Pfam AAA+ lid domain 398 424 IPR041569 -
Aip03g01998 1007 SMART CDC48_2_2 130 196 IPR004201 -
Aip03g01998 1007 SMART AAA_5 241 377 IPR003593 -
Aip03g01998 1007 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 5 442 - -
Aip03g01998 1007 Gene3D - 204 375 IPR027417 -
Aip03g01998 1007 SUPERFAMILY ADC-like 27 110 IPR009010 -
Aip03g01998 1007 CDD AAA 211 374 - -
Aip03g01998 1007 Gene3D - 113 197 - -
Aip03g01998 1007 Pfam ATPase family associated with various cellular activities (AAA) 245 374 IPR003959 GO:0005524|GO:0016887
Aip03g01998 1007 Gene3D - 376 425 - -
Aip03g01998 1007 ProSitePatterns AAA-protein family signature. 345 363 IPR003960 GO:0005524|GO:0016887
Aip03g01998 1007 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 425 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01998 Aip-Chr3 28339127 28346015 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01998 204 423 Calmodulin-binding Proteins AT3G56690 48.198 2.35e-55 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01998 K13525 - aip:107630092 1916.74