Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01964 ATGTTGCAGCAAGAAACAGGAATGGGATTGTCAAATAGAGGTTTCTCGTTGGATCAAACACAGTTCAGTCCTCAATACAGTTCCTGTTCCGGAGACAGCAACATCACAAGCCAACAACTATTATCCTCTAATTTTCAGATGGATTCTTCTTCTTCAGCGCCTTTATATTGTAACACTTCAATGCTACAAGGACTATTAGGACCTGAAAGCAATAATCAAGCACACCAAGGACCTATCAGTAATTTTCCATACTCAACGTGTTTGAACAGCAACAATAATAACAACCAATTGCATTTCACTAATAACGCCCCCTTCTGGAACGCTTCGGAGCCTGCGCCGGTTTCCATTAAAGATGCTCGATCCATCTTCTTCCCTTCATTGCACCAACCATTTTCGGCGCCAAGCTTCGATCAACAATCAAAGAATATATCTGAAGTAAGGGACTCAGGAGGTAGCATGTTGAAGAAAAGTGAGAATGAGCAATCATCAAAAAGGCCTAGAAACGAAACACCTCCATCACCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGAGACAGAATCACTGCCCTACAGCAATTGGTTTCGCCTTTCGGAAAGACTGATACGGCATCGGTGCTCTCTGAGGCCACTGAATACATCAAATTCCTCCATGAGCAAGTGACTGTTTTAAGCACCCCATATATGAAGAGTGGAGCTCAAACACAGCATCACCAGAATTCTGGTAAATCAAAGGAAGCTGATGGACCAAAACAGGATCTAAGAAGCCGAGGGCTGTGTCTGGTGCCAATTTCAAGTACATTTCCAGTGACTCATGAACCCACAGTTGATTTTTGGACGCCAACATTTGGAGGAACttatagataa 870 0.4276 MLQQETGMGLSNRGFSLDQTQFSPQYSSCSGDSNITSQQLLSSNFQMDSSSSAPLYCNTSMLQGLLGPESNNQAHQGPISNFPYSTCLNSNNNNNQLHFTNNAPFWNASEPAPVSIKDARSIFFPSLHQPFSAPSFDQQSKNISEVRDSGGSMLKKSENEQSSKRPRNETPPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEATEYIKFLHEQVTVLSTPYMKSGAQTQHHQNSGKSKEADGPKQDLRSRGLCLVPISSTFPVTHEPTVDFWTPTFGGTYR 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01964 289 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 218 IPR011598 GO:0046983
Aip03g01964 289 MobiDBLite consensus disorder prediction 151 165 - -
Aip03g01964 289 CDD bHLH_AtbHLH_like 175 226 IPR045239 -
Aip03g01964 289 MobiDBLite consensus disorder prediction 146 178 - -
Aip03g01964 289 Gene3D - 179 243 IPR036638 GO:0046983
Aip03g01964 289 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 12 279 - -
Aip03g01964 289 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 235 IPR036638 GO:0046983
Aip03g01964 289 MobiDBLite consensus disorder prediction 232 254 - -
Aip03g01964 289 PANTHER TRANSCRIPTION FACTOR BHLH123 12 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01964 Aip-Chr3 27382820 27386814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01964 97 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 61.307 9.20e-73 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01964 - - adu:107478336 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01964 03 27382820 27386814 Aip03g01964 03 27382820 27386814 ECH