Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01952 ATGGATTCATCACATCTTCTCGGTTTCAGTGTGACTAATTCTAGCTTACTCAGCAAATCATCTTTTCCAACTACACCTCCGTTATCCCACCTGCTACTTGGACCTTTGAATGAAGTAGTAAACTCACCTAATTTGGCTCTTTCTACTCACTTCAACTCTGATACTGATTCTGCATTGAATGATAGTCAGCAGTTAGTTGAAGTTACGCGTGCAGAGAAACGTCACAAATCAATGGAGGAAGCGTCGCTACAAAGCATTCCGTCGAGCACTTTGAAACAATTGCTCATTTTATGCGCCAAAGCAATGTCTGAAAACAACATGAAAGATTTTGATCAATTGATAGACAAGGCTAGAAGTGCTGTGTCTATCAGCGGGGAGCCAATTCAGCGGCTCGGTGCTTATTTAGTGGAAGGGCTTGTTGCAAGGAAGGAGAAATCGGGTAACAACATCTATCATGCTCTTAGGTGCAAGCAGCCTGCAGGTACAGAGTTACTATCATACATGCAGATGTTATATGAAATTTGTCCATACTTCAAGTTTGGTTACATGGCTGCCAATGGAGCTATTGCTGAAGCATGCCGAAATGAGGACCGAATTCACATAATAGATTTTCAGATTGCACAGGGAACTCAATGGACGACTCTCCTTCAAGCTCTTGCAGCAAGGCCTAGTGGGGCTCCACATGTGCGGATCACCGGGATTGATGATCCTGTTTCTAAATATGCTCGAGGAGAAGAATTGGAGGCAGTTGGCGAAAGTTTGTCGAAAATATCTAAGAAATTTGACATTGAGGTTGAGTTTCATGGAATTCCTGTCTTTGCCCCAGATGTAACCAGGGATATGCTTGATGTCCGGCCTGGAGAGGCCTTGGTCGTTAACTTTCCTCTTCAACTCCATCATACGGCCGATGAGAGTGTCGATGTGACTAATCCAAGGGACGGACTTCTGAGATTGGTTAAGTCTCTTTCTCCTAAGGTAACCACATTGGTGGAGCAGGAATCGAACACAAACACGACGCATTTCTTCAACAGGTTCATAGAAACACTTGATTACTACTTGGCCATGTTCGAGTCCATCAATGTTGCTCTCCCAAGAACGAGCAAGGAGCGGATCAACGTGGAACAACATTGTTTAGCTCGAGATATCGTGAACATTGTTTCTTGTGAAGGGAAGGAAAGGGTGGAGCGGCATGAACTGTTTGGTAAGTGGAGGTCTAGGTTCACAATGGCAGGTTTTGTGCAATATCCTTTGAGCTCTTATGTGAATTCCATTATAAGAAACCTCTTGAATCGCTATTCTGAGAATTATAGTCTAGTGGAGAAGGATGGAGCCATGCTGTTGGCATGGAAGAACAGAAATTTGATATCAGCTTCAGCCTGGTATTAA 1386 0.4365 MDSSHLLGFSVTNSSLLSKSSFPTTPPLSHLLLGPLNEVVNSPNLALSTHFNSDTDSALNDSQQLVEVTRAEKRHKSMEEASLQSIPSSTLKQLLILCAKAMSENNMKDFDQLIDKARSAVSISGEPIQRLGAYLVEGLVARKEKSGNNIYHALRCKQPAGTELLSYMQMLYEICPYFKFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWTTLLQALAARPSGAPHVRITGIDDPVSKYARGEELEAVGESLSKISKKFDIEVEFHGIPVFAPDVTRDMLDVRPGEALVVNFPLQLHHTADESVDVTNPRDGLLRLVKSLSPKVTTLVEQESNTNTTHFFNRFIETLDYYLAMFESINVALPRTSKERINVEQHCLARDIVNIVSCEGKERVERHELFGKWRSRFTMAGFVQYPLSSYVNSIIRNLLNRYSENYSLVEKDGAMLLAWKNRNLISASAWY 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01952 461 Pfam GRAS domain family 91 460 IPR005202 -
Aip03g01952 461 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 57 460 IPR005202 -
Aip03g01952 461 PANTHER CHITIN-INDUCIBLE GIBBERELLIN-RESPONSIVE PROTEIN 1 57 460 - -
Aip03g01952 461 ProSiteProfiles GRAS family profile. 82 461 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01952 Aip-Chr3 26715069 26718529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01952 81 460 GRAS Transcription Factor Family AT5G48150 62.467 7.72e-175 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip03g01952 GRAS 1.6e-127 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01952 - - adu:107478273 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01952 03 26715069 26718529 Aip03g01952 03 26715069 26718529 ECH
Aip08g01139 08 15422416 15425689 Aip03g01952 03 26715069 26718529 PCT