Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01939 ATGTTCAACCACAGATTGGGGATTCCACCAGGACATTCAATGGAAGTTTCTATTTCCAATTACTTGCTGGAAGTTGTGGGTTACCGAAACATGGAGATTCATCAAGCTCCGTTCAGGAGACCGAAGACGGTGCATATAATGGTGCAAGAGTATACTTTGGTTGTTCAAAGTACTTGTGTAAAAAGAAGAGGGCAGATGTGGCTTCCTTCACCAAGAGAGATTACAGTGGCTTGGCAACCTCCCCCAATTGGCTGGACTAAAATCAATACTAATGGGGCAGCCCAACCAAACCAAAATATAGCAGGATGTGGTGGATTGTTAAGGAATAGTGAGGGACAATGGATCATGGGATTCACTAGAAAGCTTGGAAGTTGCTCTGTCTTCATGACGGAACTTTGCGGGGTTTACTTAGGACTGAAAATGGCTTGGACTTTGGGGTGCAAGAGAGTTTGGCTTGAAAGTGACTCAAAAGAGATGGTTGAAAATGTTAGGAGGTGGCAGAACAGAGGAGGAACAGGTTCAATTTTATACCATAGAATTTACCAACTTTTGGAGAAAAATTGGCAGGTGAAGATAACCCATGTCCACAGAGTGGCTAACAGGTGTGCTGATTGGCTTGCCAAATTGGAGTATGAGGCAAGATGGGATTTGAACTCAGTTCTTACACCCTCTTATTTCATCCCTCTGCTCAATTGCTCCCGTTGGTCTTCAGAATGTATTTTTTTGGAACTCACTTCCGCGCTTCTGGCCAAGGACAAGCACAATAACTTTGGCTTAATGCAGCTGGTTTCTGTTAATGATGGCCAGAGGTCTATTAGAGCTTATGGTATATACTCCTATGCCTCCTTTTTTAACCACGATTGTCTTCCCAATGCCTGCAGATTTGATTATGTGGATAGTAATCCACCAGATGGCAGTAATAATACTGACATTATTGTTAGGATGATTTATGATATTCTTCAAGGCAGAGAGATCTATTTGGGCTATTTTTCTGTCAATGAAAACTATGCTAGCAAGCAGAAGAAATTGGTGGAAGACTATGGCTTCACCTGTAATTGTGATTAG 1065 0.4216 MFNHRLGIPPGHSMEVSISNYLLEVVGYRNMEIHQAPFRRPKTVHIMVQEYTLVVQSTCVKRRGQMWLPSPREITVAWQPPPIGWTKINTNGAAQPNQNIAGCGGLLRNSEGQWIMGFTRKLGSCSVFMTELCGVYLGLKMAWTLGCKRVWLESDSKEMVENVRRWQNRGGTGSILYHRIYQLLEKNWQVKITHVHRVANRCADWLAKLEYEARWDLNSVLTPSYFIPLLNCSRWSSECIFLELTSALLAKDKHNNFGLMQLVSVNDGQRSIRAYGIYSYASFFNHDCLPNACRFDYVDSNPPDGSNNTDIIVRMIYDILQGREIYLGYFSVNENYASKQKKLVEDYGFTCNCD 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01939 354 Pfam Reverse transcriptase-like 89 208 IPR002156 GO:0003676|GO:0004523
Aip03g01939 354 ProSiteProfiles SET domain profile. 242 330 IPR001214 GO:0005515
Aip03g01939 354 Gene3D SET domain 236 354 IPR046341 -
Aip03g01939 354 SUPERFAMILY SET domain 224 354 IPR046341 -
Aip03g01939 354 CDD SET_SMYD 254 354 - -
Aip03g01939 354 ProSiteProfiles RNase H type-1 domain profile. 82 212 IPR002156 GO:0003676|GO:0004523
Aip03g01939 354 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 240 354 IPR044238 -
Aip03g01939 354 Pfam SET domain 265 329 IPR001214 GO:0005515
Aip03g01939 354 SUPERFAMILY Ribonuclease H-like 85 211 IPR012337 -
Aip03g01939 354 Gene3D - 85 212 IPR036397 GO:0003676
Aip03g01939 354 CDD RNase_H_like 88 208 IPR044730 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01939 Aip-Chr3 26526441 26528230 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aip03g01939 SET 3.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01939 - - gmx:100783406 186.037