Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01937 ATGGCTTCCCGGGAAAGCACTAACTGGCTTTTCGATTACGCTTTGATTGACGATATTCCCGTCCACGATGCCACTTTCGCTGCTCCTTCCTCCGGTTTCAATTGGCCTTCCAACGCCATCAATGGTTCTTCAAATGTCGGTGTTGAAATTGATGGCTCGTTGGGCGATTCTGATGGTATCAAAGAATCTGGTTCAAAGAAGAGGGGCAGATCTGAGTCATGTGCTCCTTCTAGCTCCAAGGCATGTAGGGAGAAATTGCGGAGGGATAGGCTTAATGACAAGTTTGTTGAATTAGGCTCCATTTTGGAGCCTGGAAGGCCTCCTAAAACTGACAAGGCTGCTATTCTGATTGATGCCGTCAGAATGGTGACACAATTACGGGGCGAAGCCCAAAAGTTGAAAGACTCAAATATGGGTCTACAAGAAAAGATTAAAGAGCTGAAGGCTGAGAAGAATGAACTTCGTGACGAGAAACAGAGACTCAAGGCAGAGAAAGAAAAGTTGGAGCAGCAGCTGAAATCTATGAGTGCACAACCTAGTTTCATGGCGCCTCCTACTGCGATCCCTGCTGCATTTGCTCCTCAAGGTCAAGTCCCCGGCAACAAGCTGGTTCCTATCATCAGCTATCCAGGAATGGCAATGTGGCAATTCATGCCCCCTGCTGCAGTTGATACCTCGCAGGATCATGTACTCCGCCCACCAGTTGCCTAA 711 0.481 MASRESTNWLFDYALIDDIPVHDATFAAPSSGFNWPSNAINGSSNVGVEIDGSLGDSDGIKESGSKKRGRSESCAPSSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKLKDSNMGLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQLKSMSAQPSFMAPPTAIPAAFAPQGQVPGNKLVPIISYPGMAMWQFMPPAAVDTSQDHVLRPPVA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01937 236 CDD bHLH_AtILR3_like 80 155 - -
Aip03g01937 236 Gene3D arf6 gtpase in complex with a specific effector, jip4 125 179 - -
Aip03g01937 236 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 236 - -
Aip03g01937 236 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Aip03g01937 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Aip03g01937 236 Coils Coil 123 178 - -
Aip03g01937 236 SMART finulus 81 132 IPR011598 GO:0046983
Aip03g01937 236 MobiDBLite consensus disorder prediction 51 83 - -
Aip03g01937 236 Gene3D - 63 124 IPR036638 GO:0046983
Aip03g01937 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 146 IPR036638 GO:0046983
Aip03g01937 236 PANTHER BHLH TRANSCRIPTION FACTOR 1 236 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01937 Aip-Chr3 26479557 26482729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01937 1 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 70.711 1.21e-112 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip03g01937 HLH 4.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01937 - - gmx:100788858 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01937 03 26479557 26482729 Aip03g01937 03 26479557 26482729 ECH