Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01929 ATGCATCGCTGGCCTCAGCGGCAAAGATTCGATTCATGGTTTAGGGTTTCTCTGAAGTCGCTGCTTGAAAGGTTCGATTCCTTACCCCTTGTCTTGCTTGAAACCATCGTGAAGAATTGCGAGAAGGCTTTCTCTGAAGTCGCTGCTAAGAGGTTTCTTGATGATATGCTTCACTATCTCCCTGTTTATGAAGAAACTTACAAGAGTCTCAAATCAAGGGGTATTCGGTTCCCTGGCCGTCACAACGAGAGCTTGGTGCCTATTTTCACTCCTCCGCGTTCGGTGTCTGAGGTAGTGATTAACGAGACTCTGGTTGTAGTGGTGGTAGTGGTGATAGCGGCAGAGGGGGTGAGATCTTCTGTAGAGGCATCGCATGGAAGACCCTGTGTTCTTAAGACAATGGTTCAGTTTGCAATTGGGAAGGCGTGTGAAGAGGAAAAATGGGAAGTGGAGATTCGCGATCCAAGGAAAAGTGTTCGCCTTTGGCTTGGAACCTTCAACACCACCAAAGAAGCCACCAGGGCTTATGACAGAGAAGCTCGTAAGATTTGCGAAAAGAAAGCTAAAGTGAAATTCCCTAACGAGGATGACGAACCTTCCTCCTCCTCCCATTTGAAGATCGAGTAA 627 0.4737 MHRWPQRQRFDSWFRVSLKSLLERFDSLPLVLLETIVKNCEKAFSEVAAKRFLDDMLHYLPVYEETYKSLKSRGIRFPGRHNESLVPIFTPPRSVSEVVINETLVVVVVVVIAAEGVRSSVEASHGRPCVLKTMVQFAIGKACEEEKWEVEIRDPRKSVRLWLGTFNTTKEATRAYDREARKICEKKAKVKFPNEDDEPSSSSHLKIE 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01929 208 Gene3D AP2/ERF domain 141 194 IPR036955 GO:0003700|GO:0006355
Aip03g01929 208 ProSiteProfiles AP2/ERF domain profile. 113 193 IPR001471 GO:0003700|GO:0006355
Aip03g01929 208 ProSiteProfiles VHS domain profile. 30 73 IPR002014 GO:0035091|GO:0043130
Aip03g01929 208 PANTHER TOM1-LIKE PROTEIN 1 23 57 IPR044836 GO:0035091|GO:0043130|GO:0043328
Aip03g01929 208 SMART rav1_2 147 199 IPR001471 GO:0003700|GO:0006355
Aip03g01929 208 SUPERFAMILY DNA-binding domain 145 193 IPR016177 GO:0003677
Aip03g01929 208 PANTHER TOM1-LIKE PROTEIN 1 57 104 IPR044836 GO:0035091|GO:0043130|GO:0043328
Aip03g01929 208 PANTHER TOM1-LIKE PROTEIN 1 57 104 - -
Aip03g01929 208 PANTHER TOM1-LIKE PROTEIN 1 23 57 - -
Aip03g01929 208 Pfam AP2 domain 146 183 IPR001471 GO:0003700|GO:0006355
Aip03g01929 208 SUPERFAMILY ENTH/VHS domain 29 78 IPR008942 -
Aip03g01929 208 CDD AP2 147 194 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01929 Aip-Chr3 26173382 26174939 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01929 147 195 AP2-EREBP Transcription Factor Family AT1G72360 65.306 9.06e-16 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip03g01929 AP2 4.2e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01929 - - cit:102617088 107.842