Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01927 ATGGGGAACAATAGCATGTTTCGTTATGCAGATGGTGTGGACAAGTTTTTAATGTTGTTTGGGACCATGGGAAGCATTGGTGATGGATTGCAGAACCCTCTTATGATGTATATTCTTAGTGATGTCATCAATGCTTATGGAGACAAGAATACCAAATTGGGTATGCATGATGTGAACAAGTATGCATTGAGGCTTTTATTAGTTGCAATTGGTGTTGGACTTTCAGCTTTTGTAGAAGGAATGTGTTGGGCAAGAACTGCAGAGAGACAGGCTTCAAGAATGAGAATGGAATATTTGAAATCAGTGCTGAGACAAGAAATTGGATTCTTTGATAGCCAGACAGCTGGTACGTCAACAACTTACCAAGTTGTCTCACTCATCTCCTCAGATGCCAATACCATCCAAGTTGCCTTGTGTGAGAAGATACCAGACTGCTTGACATACATGTCAACATTCTTTTTCTGCCACATCTTTGCATTTGTGCTTTCATGGAGACTCACACTTGCAGCCATACCACTCTCCCTCATGTTCATAGTCCCAGCTCTCATGTTTGGGAAGATGATGTTGGATGTGACAATGAAAATGATTGAGTCTTATGGTGTTGCTGGTGGGATTGCAGAGCAAGCAATATCTTCAATAAGAACTGTTTATTCCTATGTTGGGGAGAACCAAACTCTTAACAAATTCAGCTGTGCACTTCAGAAAACCATGGAGTTAGGAATAAAGCAAGGTTTTGCAAAAGGGTTGATGTTAGGGAGCATGGGAGTTATTTATATAAGTTGGGGTTTTCAGGCTTGGGTTGGAACCATTCTTATCACTGAAAAAGGAGAAAAGGGTGGTCATGTTTTTGTGGCTGGCTTCAATGTACTCATGGGAGGGCTGAGTATTTTAAGTGCACTTCCAAATTTAACTGCCATAACAGAAGCAACTACTGCCGTCACTCGCCTTTTCGAAATGATTGATAGGGTACCATCCATAGATTCTGAAGACAAAAAGGGGAAAGCCTTGTCATATGTTAGAGGAGAAATTGAATTCAGGAACATATACTTCAATTATCCATCAAGACCAGACACACCAATCTTACAAGGACTCAATCTCACTTTTCCAGCAGGCAAGAGAGTAGGCCTTGTTGGTGGTAGTGGTTCTGGAAAATCAACAATCATTGCACTTCTTGAGAGGTTCTATGACCCTATTGAGGGAGAAATACTATTGGATGGTCACAAGATTAGTAGACTTCAGTTGAAATGGTTTAGATCCCAATTTGGCCTGGTGAATCAAGAGCCTGTTCTTTTTGCTACATCAATTAAAGAGAATATATTGTTTGGAAAAGAAGGGGCTTCAATGGAAAATGTGATAAGTGCAGCTAAGTCAGCAAATGCACATGATTTCATTGTTCAGTTGCCAGATGGTTATGAAACTCAAGTTGGACAGTTTGGATTTCAATTATCCGGCGGACAGAAGCAGCGAATCGCCATAGCAAGAGCATTACTTAGAGATCCAAAGATTCTCCTGCTTGATGAAGCAACCAGTGCTCTGGATGCACAATCCGAAAGAGTAGTACAGGCTGCAATAGATCAAGTTTCAAAAGGAAGGACAACAATCATCATCACACACCGTTTATCGACGATACAAACGGCCGACCTCATTGCTGTCCTTCAAGAAGGCAGAGTGATTGAATTAGGCACCCATAATGAGCTGATGGACTTGACTGACGGACGAGGCGGAGCCTATGCCCGAATGGTAGAGTTGCAGCAAGTAACAGCTCAGAATGATGAACCAAGGCCTAGTTCCAATGCTCCCAAGGAGCGAAGGAGCTCACAAAGGATCAGCACTCCTCAAAGCCCTTCAGTGAGTTTCACATCAAGCACACATGGCACTCCAATGTTCACTCCCTTCAGCCAGGGACTTTCCATGGGAACTCCTTACTCCTACACAGTTCAATATGATCTGGATGATGATAGTTTCGAAGATAACCCGAAACGATTGCATCATCCGGCTCCATCACAGTGGCAATTGCTAAAGTTAAATGCTCCTGAGTGGGGTAGAGCATTGCTTGGACTCTTGGGAGCATTGGGCTCTGGAGCAGTTCAACCAATAAATGCATACTGTGTTGGATTGCTAATATCTATCTACTTTGACACTGATAACATGAAATCCAAGACTCGACGCCTGGCCCTGGTTTTCTTAGGAATTGGTGTCTTTAACTTCTTCACAAGCATCCTCCAACACTACAATTTCGCAGTCATGGGCGAAAGGTTGACTCGAAGAATCCGCGAGAAGCTTCTAGAAAAACTGATGACATTTGAGATAGGATGGTATGACCAGGAAGAGAACACCAGCGCGGCGATCTGCGCAAGACTATCTTCCGAAGCCAACTTGGTTCGATCGCTGGTAGGCGATCGGATGTCATTGTTATCACAGGCATTATTTGGTTCTCTGTTTGCGTATGCTCTAGGACTCGTGCTGACGTGGAAGCTGTCCCTTGTGATGATTGCAGTGCAGCCAATTGTCATCGGAAGCTTCTATGCAAGGAGTGTTTTAATGAAAAGAATGGCTGAAAAGGCGCGAAAGTCACAACGAGAAGGAAGCCAGCTGGCAAGTGAGGCAGTTATAAACCACAGAACAATAACCGCCTTCAGTTCTCAGAAGAGAATGATGTCACTCTTCCAATCCACTATGTTAGGCCCTAAGCAAGAGAGCATTAGGCATTCTTGGATTTCAGGTTTCGGCCTTTTCAGCTCCCAATTCTTCAACACTGCTTCCACAGCTTTAGCATACTGGTATGGTGGGAGGCTCCTTGTGAATGGTGACATTACTCCCAAGCATCTGTTCCAAGCCTTCTTGATATTGCTCTTCACTGCTTACATCATTGCAGAGGCTGGAAGCATGACAAATGACATATCTAAAGGAAACAGCGCAGTCGGATCGGTTTTCGCCATCTTGGACCGGAAAAGCGAGATTGATCCTGAGACATCATGGGGGTCAGATAAAAGAAGGAAGATTAGGGGTAAAGTTGAGCTTAAGAGTGTGTTCTTTGCATATCCAACTAGGCCTGATCAAATGATATTTAAGGGTTTGTGTCTCACAGTTGAAGCTGGGAGAACAGTGGCACTAGTAGGGCATAGCGGGAGTGGCAAATCCACCATTATTGGTCTTGTTGAGAGATTTTATGATCCTTTGAAGGGAAGTGTGTGTATAGATGAACAAGATATTGTGTCATATAATTTGAGAATGCTGAGGTCACATATTGCATTGGTGAGTCAAGAGCCAACACTTTTTGCTGGAACCATTAGAGAAAATATTGCTTATGGAAAAGAAGAGGCTACTGAATCTGAGATAAGAAGGGCTGCAGCTATGGCTAATGCTCATGAATTCATAAGTGGAATGAAAGATGGGTATGAGACATATTGTGGAGAAAGAGGGGTTCAACTCTCAGGAGGGCAAAAACAAAGAGTAGCATTAGCAAGGGCCATACTAAAGAATCCAGCAATATTGCTTCTTGATGAGGCTACAAGTGCATTGGACAGTGTGTCAGAGAATTTGGTCCAAGAAACACTTGAGAAGATGATGGTTGGACGAACATGCATTGTTGTGGCACATAGGCTATCTACAATACAAAGATCCAACTCCATTGCTGTCATTAAGGGTGGCAAGGTTGTGGAACAAGGTTCACATAATGAGTTAATTTCCCTTCATGGGGCATACTATTCTCTTATTAAACATCAAAATGCTAACTCCTCTCAATAA 3747 0.4297 MGNNSMFRYADGVDKFLMLFGTMGSIGDGLQNPLMMYILSDVINAYGDKNTKLGMHDVNKYALRLLLVAIGVGLSAFVEGMCWARTAERQASRMRMEYLKSVLRQEIGFFDSQTAGTSTTYQVVSLISSDANTIQVALCEKIPDCLTYMSTFFFCHIFAFVLSWRLTLAAIPLSLMFIVPALMFGKMMLDVTMKMIESYGVAGGIAEQAISSIRTVYSYVGENQTLNKFSCALQKTMELGIKQGFAKGLMLGSMGVIYISWGFQAWVGTILITEKGEKGGHVFVAGFNVLMGGLSILSALPNLTAITEATTAVTRLFEMIDRVPSIDSEDKKGKALSYVRGEIEFRNIYFNYPSRPDTPILQGLNLTFPAGKRVGLVGGSGSGKSTIIALLERFYDPIEGEILLDGHKISRLQLKWFRSQFGLVNQEPVLFATSIKENILFGKEGASMENVISAAKSANAHDFIVQLPDGYETQVGQFGFQLSGGQKQRIAIARALLRDPKILLLDEATSALDAQSERVVQAAIDQVSKGRTTIIITHRLSTIQTADLIAVLQEGRVIELGTHNELMDLTDGRGGAYARMVELQQVTAQNDEPRPSSNAPKERRSSQRISTPQSPSVSFTSSTHGTPMFTPFSQGLSMGTPYSYTVQYDLDDDSFEDNPKRLHHPAPSQWQLLKLNAPEWGRALLGLLGALGSGAVQPINAYCVGLLISIYFDTDNMKSKTRRLALVFLGIGVFNFFTSILQHYNFAVMGERLTRRIREKLLEKLMTFEIGWYDQEENTSAAICARLSSEANLVRSLVGDRMSLLSQALFGSLFAYALGLVLTWKLSLVMIAVQPIVIGSFYARSVLMKRMAEKARKSQREGSQLASEAVINHRTITAFSSQKRMMSLFQSTMLGPKQESIRHSWISGFGLFSSQFFNTASTALAYWYGGRLLVNGDITPKHLFQAFLILLFTAYIIAEAGSMTNDISKGNSAVGSVFAILDRKSEIDPETSWGSDKRRKIRGKVELKSVFFAYPTRPDQMIFKGLCLTVEAGRTVALVGHSGSGKSTIIGLVERFYDPLKGSVCIDEQDIVSYNLRMLRSHIALVSQEPTLFAGTIRENIAYGKEEATESEIRRAAAMANAHEFISGMKDGYETYCGERGVQLSGGQKQRVALARAILKNPAILLLDEATSALDSVSENLVQETLEKMMVGRTCIVVAHRLSTIQRSNSIAVIKGGKVVEQGSHNELISLHGAYYSLIKHQNANSSQ 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01927 1248 ProSitePatterns ABC transporters family signature. 1144 1158 IPR017871 GO:0005524
Aip03g01927 1248 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 684 969 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip03g01927 1248 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 10 1243 - -
Aip03g01927 1248 Gene3D - 995 1248 IPR027417 -
Aip03g01927 1248 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1005 1241 IPR003439 GO:0005524
Aip03g01927 1248 Pfam ABC transporter 1024 1172 IPR003439 GO:0005524
Aip03g01927 1248 Pfam ABC transporter 361 510 IPR003439 GO:0005524
Aip03g01927 1248 ProSitePatterns ABC transporters family signature. 482 496 IPR017871 GO:0005524
Aip03g01927 1248 CDD ABC_MTABC3_MDL1_MDL2 343 584 - -
Aip03g01927 1248 Pfam ABC transporter transmembrane region 18 293 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip03g01927 1248 Pfam ABC transporter transmembrane region 685 954 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip03g01927 1248 CDD ABC_6TM_Pgp_ABCB1_D1_like 18 316 - -
Aip03g01927 1248 Gene3D ABC transporter type 1, transmembrane domain 76 978 IPR036640 GO:0005524|GO:0016021
Aip03g01927 1248 SMART AAA_5 1032 1224 IPR003593 -
Aip03g01927 1248 SMART AAA_5 370 562 IPR003593 -
Aip03g01927 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 584 IPR027417 -
Aip03g01927 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1000 1242 IPR027417 -
Aip03g01927 1248 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 19 308 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip03g01927 1248 Coils Coil 1167 1187 - -
Aip03g01927 1248 MobiDBLite consensus disorder prediction 586 626 - -
Aip03g01927 1248 SUPERFAMILY ABC transporter transmembrane region 672 988 IPR036640 GO:0005524|GO:0016021
Aip03g01927 1248 CDD ABC_MTABC3_MDL1_MDL2 1005 1242 - -
Aip03g01927 1248 MobiDBLite consensus disorder prediction 602 626 - -
Aip03g01927 1248 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 343 579 IPR003439 GO:0005524
Aip03g01927 1248 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 10 1243 IPR039421 -
Aip03g01927 1248 Gene3D - 341 603 IPR027417 -
Aip03g01927 1248 CDD ABC_6TM_Pgp_ABCB1_D2_like 696 987 - -
Aip03g01927 1248 SUPERFAMILY ABC transporter transmembrane region 7 327 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01927 Aip-Chr3 26081945 26089342 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01927 6 1248 Calmodulin-binding Proteins AT2G36910 42.777 0.0 986
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01927 K05658 - gmx:100788127 2110.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01927 03 26081945 26089342 Aip03g01927 03 26081945 26089342 ECH