Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01916 ATGGGGGGAGGCCACGGCGAGGGCACAACCTACAAAGGCATAACCATACACCAACCTAAGCGGTGGCACACCGTCGCCGGCAAGGGTCTCTGCGCTGTTATGTGGTTAGTTTCGCTCGTTCCTTTTCTCCGTTTCGATCTGCAGTCGCTACTGATCCATATTCACCATGTCTCGGTTTTTGTGTTCTCCAGGGTTGGAGGCACCCCTGGGAGGGCCACGATGATCATGGCCATGGTGGTGGACACTAGGCCATTCCATTCCGACGCTTCTGTGGTGGTGTTGGGAGGACTGCCCATGCGGAAAACAGACATTCCAATGGACAAGGACCCCTTGATTTGCTCAAGAATGTTGAGAGCAATGCTGAGCCTCCGCGAAGAGGAAGAACAAGCTGCAATCGCCGACATGGTGAAGTACTCCAGAGAACCCGAAAATCCCACCAAGTCTTGCAAGGCTAGAGGCTCTGATTTGAGGGTTCATTTCAAGAACACTAGGGAGACTGCCTTTGCTATCAGGAAGTTGCCGCTTGTTAAGGCAAAGAGGTATTTGGAGGACGTTTTGGCCCACAAACAGGCCATTCCATTTCGACGCTTCTGTGGTGGTGTTGGGAGGACTGCCCAGGCAAAGAACAGACATTCCAATGGACAAGGACGCTGGCCTGTAAAATCAGCTAAATTCATCCTTGATTTGCTCAAGAATGCTGAGAGCAATGCTGAGGTGAAAGGTTTGGATGTGGATGCTCTTTACATTTCCCACATCCAAGTCAACCAAGCACAGAAACAAAGACGCCGCACCTACCGTGCTCACGGAAGAATCAATCCCTACATGTCATCTCCCTGCCACATAGAGTTGATCTTATCCGAGAAGGAAGAGCCTGTTAAGAAAGAGCCGGAGTCCCAGTTGGCAACAAGCAAGAAGTCTCAAGGCCTTCGTAGTGGTGCTTCATCCTAA 948 0.5105 MGGGHGEGTTYKGITIHQPKRWHTVAGKGLCAVMWLVSLVPFLRFDLQSLLIHIHHVSVFVFSRVGGTPGRATMIMAMVVDTRPFHSDASVVVLGGLPMRKTDIPMDKDPLICSRMLRAMLSLREEEEQAAIADMVKYSREPENPTKSCKARGSDLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPESQLATSKKSQGLRSGASS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01916 315 SUPERFAMILY Ribosomal protein L22 135 288 IPR036394 GO:0003735|GO:0005840|GO:0006412
Aip03g01916 315 Pfam Ribosomal protein L22p/L17e 151 286 IPR001063 GO:0003735|GO:0005840|GO:0006412
Aip03g01916 315 ProSitePatterns Ribosomal protein L22 signature. 261 285 IPR018260 GO:0003735|GO:0005840|GO:0006412
Aip03g01916 315 MobiDBLite consensus disorder prediction 289 315 - -
Aip03g01916 315 MobiDBLite consensus disorder prediction 301 315 - -
Aip03g01916 315 Gene3D Ribosomal protein L22/L17 135 313 IPR036394 GO:0003735|GO:0005840|GO:0006412
Aip03g01916 315 PANTHER 60S RIBOSOMAL PROTEIN L17 135 315 IPR005721 GO:0003735|GO:0006412|GO:0015934
Aip03g01916 315 TIGRFAM uL22_arch_euk: ribosomal protein uL22 138 288 IPR005721 GO:0003735|GO:0006412|GO:0015934
Aip03g01916 315 Hamap 50S ribosomal protein L22 [rplV]. 134 288 IPR005721 GO:0003735|GO:0006412|GO:0015934
Aip03g01916 315 CDD Ribosomal_L22 149 285 IPR001063 GO:0003735|GO:0005840|GO:0006412
Aip03g01916 315 PANTHER 60S RIBOSOMAL PROTEIN L17-2-LIKE 135 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01916 Aip-Chr3 25604481 25610070 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01916 135 315 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 86.188 6.27e-113 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01916 K02880 - gmx:100816536 343.969