Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01907 ATGAGCAACAATAATATGAACAATTATTTCATGCCTTTGCCTGGCTCTCGCAGAACAAGTAGTGATAGAAGAGCATTTAATGTTTACACTTTTGATAATAGTGATTCCAATGACGTGCCTGTGTATTACAGATCTCGCTCTAACCATAACACTGGTAACAGGAGTTCAGGTGTGATAGATCCAAGGAGGGTGTGGGAAAGCAGAACTCCATCATCAGGACGCCACACTGCTCCAAATTTTCAAGCACAACCACATAACAGGCAACAATTTCATTTTAATAATGGCGAGATAGGAAGGGGCTCAAACCCCAGGTTCAGAGATATTTTCCGGCAATCACCGCCGCGAACCGCAACAACCACAGAGATTCCCCCACAAGTAGAAAATTCTGAGTCAATGGCTCTTAGCAAGCTCAAGAAAGAAGTCTACAACCCCGTGCCAAAGCGGCTAGCCCGGAGACTCAGCCTATACTACAGAGGCGACAACAACAACGGGTCGAATGGTGTGCGAGAAAGGGAGAAAGACAAGGATGAAGAAGGTAAGAGTTGTGCTGTTTGCTTGGAAGATTTTGAGGCAAAAGAAGAAGTTATGGTCACACCATGTAACCACATGTTCCATGAGGAATGCATAGTGCCTTGGGTAACAAGCAAAGGACAGTGCCCAGTTTGTAGGTTTGTGATAATTGAGAGAGTTATAGGGAACCTTTACCCTTCTTCATTCAATAGCAGTAACATTGCAAATATGGAACCAAGTGAACTAATTGCTGGTGAGCTTTTGTCAATTTTGAGCGCCATGGAAGAAGCTTTTCAGTTGGGGAATGGAATGTACTAG 828 0.4384 MSNNNMNNYFMPLPGSRRTSSDRRAFNVYTFDNSDSNDVPVYYRSRSNHNTGNRSSGVIDPRRVWESRTPSSGRHTAPNFQAQPHNRQQFHFNNGEIGRGSNPRFRDIFRQSPPRTATTTEIPPQVENSESMALSKLKKEVYNPVPKRLARRLSLYYRGDNNNGSNGVREREKDKDEEGKSCAVCLEDFEAKEEVMVTPCNHMFHEECIVPWVTSKGQCPVCRFVIIERVIGNLYPSSFNSSNIANMEPSELIAGELLSILSAMEEAFQLGNGMY 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01907 275 ProSiteProfiles Zinc finger RING-type profile. 182 223 IPR001841 -
Aip03g01907 275 Pfam Ring finger domain 181 223 IPR001841 -
Aip03g01907 275 SMART ring_2 182 222 IPR001841 -
Aip03g01907 275 MobiDBLite consensus disorder prediction 70 96 - -
Aip03g01907 275 MobiDBLite consensus disorder prediction 66 124 - -
Aip03g01907 275 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 4 272 - -
Aip03g01907 275 MobiDBLite consensus disorder prediction 1 20 - -
Aip03g01907 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 232 IPR013083 -
Aip03g01907 275 CDD RING-H2_PA-TM-RING 182 223 - -
Aip03g01907 275 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 4 272 - -
Aip03g01907 275 SMART ringv_2 181 223 IPR011016 GO:0008270
Aip03g01907 275 SUPERFAMILY RING/U-box 172 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01907 Aip-Chr3 25324602 25327242 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01907 128 272 C3H Transcription Factor Family AT3G58720 51.370 1.43e-45 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01907 - K19041 aip:107630161 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01907 03 25324602 25327242 Aip03g01907 03 25324602 25327242 ECH