Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01899 ATGTCCGACGGAGCAGACCACGGAGTTAGATCGTTTGAGGGCGAAGGCTTTGCAGGGATGGAGTCGGACGATGTCGGAGGAATGTCTGACAATTATTCGGATGATGACTTATACACTGTTGATTCCGGCGAATCGATAGGTTGGATTGATTTTTTGAACTTGAGCGAGGAGGAGGTTCTCCGCTTTAATTTCACAGATGTTTACATTGCATTTGAGTTCTACCAGCAATATGCAAAGCACCATGGCTTCGGCGCGAGACGTTTCAGAAGTGAAAAACGTGGTGAATTAAGGATACGGCAGGAGTTCGTGTGCCACCGACAAGGGTACCGATCCCCGAAGTTCTACTCGATGCCTAACCAGCAGAAGAGGCCGAGGGCCGAGACACGGTGTGGATGCCCTGCAAGGATGCTACTTTGCATGGACGATGAATCAGGACGTTGGTGCGTTGCGTACTTTTCAGACGCGCATAACCACCACGTTCTTGAGTTGCGATTTTCTTCCATGCTCCCAGGCCATCGAAGGATGAGCGAAGCGGACATCGAGCAGATGAACGACATGCGTAAAGGAAGCATTGGCGTCTCGCGAATCCATGGTTTTATGGCGAGCCTAGCCGGCGGGTATCATAATGTCCCGTACACAACAAGGGACATGCACAATGTATTTGGAGACGTGGTCGCATTTGATGCAACGTACAAGAAAAATGTTTACCTTTCACCTCTTGTAGTGTTCTCCGATGTGAATCACCACAACCAAACAGTTGTCTTTGCCGCTGCACTAGTGGCAGACGAGAAAGAAAAGACCTATGTCTGGCTGCTTCAACAGTTGCAAACCTCAATGAAAGGGAAGGCTCCCGCATCCATAATAACCGACGGTGACAGGCAAATGAAGTCTGCGATCGAGCAAGTTTTTCTAGAGGCTCACCATCGACTATGTGCTTGGCATCTACTCCGAAACGCCACGAGCAACATCGGAAAGCCTAAATTCACCAGGATGTTTAGGGATTGCATGCTTGGCGACTACGAGGTCGGAACATTCCAGAGAAAGTGGTTTGAGATGGTTGAGAAATTTGGCGTCGCCGATAAAATATGGGTACAAGACATGTACGAGAGAAGGTACAGTTGGGCCACAGCACACATACGAGGAAAGTTCTTTGCCGGATTTCGCACAACCTCAAGGTGCGAGGGCTTACACGCTGTGATATCACGGTATGTTAAGTCTCGATACAGTTACACTGATTTTTTATGTCATTTCCATCGATGCTTGATGTTCGTGCGTGCAAAGAAAATAGAGGCTGATTTCGAGTGTGCAAATGGTGACCCTATTATGACCACCAACCTGAAACAGTTGGAGCGGGGTGCAGCCGAGAACTACACTCGGACAATATTCTATTTGTTTGTTCACATTCTTGACAGGGCCTGTGCAATGAGGGTGGTTGATTCTGAAGACAACGGTTCGTATTTTATCCACACCGTCTCTCGATACGGCACTCCAGGGAAGGATTGGCGTGTTGTTGCAACGTCTGATATGAGCGAAGTCCGATGCACGTGCATGAGAATGGAATGTTTCGGGGTCCCCTGCGAACATATAATTGCGGTGCTTGTTCTTAACAATGTTCATGAGATCCCAAGTTCTCTGATATTGCCGAGATGGACCAAGGATGTAAAACTTATGGTGCACTTCGAGAACGAACATGCAGCAGACACCAGTTTTTCACCCGAGGGGCCACCCACTGCGGGTGGCAGAGCCCCGGCACGGAATCCACCCAAGCGCAATACAAAGGGTAACGGTGATGACGGTGGAAAGAAAACCAAGCGATGTCGTTTGTGCCGCGAGGTGGGACATAATAGGACGACGTGTCCGGACCGCCGCACAATGGAGTCATCTAGCGCAGTTGCAGATGAAATGGATTCGATGGACACTGACATGCTCTATGATAACCTATCGGGGGATCTGTATGCGACTGCGGAGATTCCTTCGTTCCGATGCTCCGACAGTGACACGCAGGCTGGGTTTGTTGACAGTGACTTCGCTGGGACTAACACGTCCGGGCCAGTCATGTCTCTCGCCGATTGA 2073 0.4959 MSDGADHGVRSFEGEGFAGMESDDVGGMSDNYSDDDLYTVDSGESIGWIDFLNLSEEEVLRFNFTDVYIAFEFYQQYAKHHGFGARRFRSEKRGELRIRQEFVCHRQGYRSPKFYSMPNQQKRPRAETRCGCPARMLLCMDDESGRWCVAYFSDAHNHHVLELRFSSMLPGHRRMSEADIEQMNDMRKGSIGVSRIHGFMASLAGGYHNVPYTTRDMHNVFGDVVAFDATYKKNVYLSPLVVFSDVNHHNQTVVFAAALVADEKEKTYVWLLQQLQTSMKGKAPASIITDGDRQMKSAIEQVFLEAHHRLCAWHLLRNATSNIGKPKFTRMFRDCMLGDYEVGTFQRKWFEMVEKFGVADKIWVQDMYERRYSWATAHIRGKFFAGFRTTSRCEGLHAVISRYVKSRYSYTDFLCHFHRCLMFVRAKKIEADFECANGDPIMTTNLKQLERGAAENYTRTIFYLFVHILDRACAMRVVDSEDNGSYFIHTVSRYGTPGKDWRVVATSDMSEVRCTCMRMECFGVPCEHIIAVLVLNNVHEIPSSLILPRWTKDVKLMVHFENEHAADTSFSPEGPPTAGGRAPARNPPKRNTKGNGDDGGKKTKRCRLCREVGHNRTTCPDRRTMESSSAVADEMDSMDTDMLYDNLSGDLYATAEIPSFRCSDSDTQAGFVDSDFAGTNTSGPVMSLAD 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01899 690 Pfam MULE transposase domain 224 318 IPR018289 -
Aip03g01899 690 MobiDBLite consensus disorder prediction 1 25 - -
Aip03g01899 690 ProSiteProfiles Zinc finger SWIM-type profile. 501 537 IPR007527 GO:0008270
Aip03g01899 690 MobiDBLite consensus disorder prediction 565 603 - -
Aip03g01899 690 SUPERFAMILY Retrovirus zinc finger-like domains 591 626 IPR036875 GO:0003676|GO:0008270
Aip03g01899 690 Pfam FAR1 DNA-binding domain 72 161 IPR004330 -
Aip03g01899 690 PANTHER PROTEIN FAR1-RELATED SEQUENCE 3 55 562 - -
Aip03g01899 690 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 55 562 IPR031052 GO:0006355
Aip03g01899 690 Pfam SWIM zinc finger 508 533 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01899 Aip-Chr3 25152912 25155420 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip03g01899 MULE 2e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01899 - - aip:107632754 1355.12