Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01897 ATGATGTCAAGGTCGTATACAAATCTCTTAGATTTGGCTTCTGGGAATTTCCCGGCAATGGGGAATTCGTTTAAAGAACGGCGGCGGATGCCAAGGGTTATGAGTGTACCTGGGATTGTCACAGAAGTAGATGATGATCAGGCAGTTAGTGTTTCTTCTGATAACCCGTCAACTGTTTCTACAGATAGAATGATCATTGTAGCAAATCAGCTACCTTTAAAAGCAAAGCGACGAGAGGACAACCAAGGTTGGAATTTCAGTTGGAATGAGGATTCCTTGCTTTTACAACTCAAGGATGGACTTCCAGAAGAGATGGAGGTTCTTTATGTTGGATCATTGCGTGTTGACATTGACCCAGCTGAGCAGGATGATGTGTCACAGTATTTGTTGGATAAATTCAAATGTGTTCCTACTTTTCTACCCGCTGATGTTTTGGCAAAGTTTTATGATGGCTTCTGTAAAAGGCAGTTATGGCCACTTTTTCATTACATGTTACCATTTTCAACCGCTAACAGCCACCGTTTTGATCGATCTTTATGGGAAGCCTATGTGCTAGCAAATAAGCTATTTTTTCAAAAGGTAGTTGAAATAATAAACCCAGAAGATGATTTTATTTGGGTTCATGATTATCATTTGATGGTGCTGCCAACCTTTATAAGAAGGCGCTTTAACAGGGTTAAACTGGGATTTTTCCTGCATAGTCCCTTTCCTTCATCAGAGATATATAGGACTCTTCCTGTCAGGGAGGAGATACTTAAAGCATTACTCAACTCTGATATCATTGGATTCCACACGTTTGACTATGCTCGTCATTTCCTTTCTTGCTGTAGTCGTATGCTGGGTCTGGAGTATCAGTCAAAGAGGGGCTATCTAGGATTGGAATATTATGGAAGGACTATCAGTATTAAGATTATGCCTGTAGGGATTCACATGGGTCGAATTGAAACCGTTATGAAGATGGCAGATGAGGAGTGCAAGGCAAGGGAGCTCAAACAGCAATTTGAAGGGAAAACCATTTTGCTTGGTGTTGATGATATGGACATTTTTAAAGGTATTAATTTGAAGATTTTGGCTATGGAGCAAATGCTCAAACAACACCCCAAATGGCAAGGAAGAGCTGTTCTGGTCCAGGTTGTAAATCCTGCAAGGGGAAAAGGGATACATCTAGAAGAGATACATGCTGAAATAGAAGAAAGCTGCAGCAGGATTAACAGGATGTATGGACGGCCTGGTTATGAACCAATTATTTTTATTGATAGATCAGTTTCAGTTGCTGAAAAGGTTGCCTATTACAGCCTTGCTGAGTGTGTTATTGTCACAGCTGTGAGAGATGGGATGAATCTAACTCCTTATGAATATATTGCTTGTAGACAGGGAATATCTGGTAATGGTTCATGTTCCGATATTAGAAGCCCAAAGAAGAGTATGTTAGTAATATCAGAATTTATTGGGTGTTCTCCATCACTCAGTGGGGCTATACGTGTCAATCCATGGAATGTTGAGGCCACTGCAGAGGCAATGAATGAGGCTATCTCAATGAGTGATGGAGAGAAGCAGTTGCGGCATGAAAAGCACTACCGGTATGTTAGCACACATGATGTAGCATATTGGTCACGTAGTTTCTTGCAGGACATGGAGAGGGCTTGCGCTGACCTTCTAAGAAAAAGATGTTGGGGAATTGGTCTTAGTTTTGGATTTAGAGTTGTAGCACTTGACCCAAATTTTCGTAAGCTCTCAATTGATGCTATGGTTTCATCTTACAAGAGGGCAAGGAGTAGGGCCATTTTGTTGGACTATGATGGTACGGTGATGCCACAGAATTCCATTAATAAGAGTCCAAGCAATGAGGTTATCTCTCTTTTGGACACGCTTTGTGCAGACCCCAGAAATGTAGTTTTCATTGTTAGCGGAAGGGGGAGGAATAGCTTAAGTGATTGGTTCTTACCCTGCAAAAATCTGGGAATTGCCGCAGAACATGGTTACTTTTTGAGATGGTCGCAAAGTGCACAATGGGAAATTTGTGGTAAGAACATGGACTTTGGATGGATGCAGATTGCTGAACCCGTGATGAAACTCTACACAGAGGCAACTGATGGTTCCAACATTGAAACAAAGGAAAGTGCTTTGGTCTGGCAATACCGGGACGCAGATCTTGGTTTCGGATCTTCTCAAGCTAAGGAAATGTTGGATCATCTAGAAAGTGTTTTAGCCAATGAGCCCGTTGCCGTGAAGAGTGGCCAGTTCATTGTTGAAGTAAAACCCCAGGATGTGAGCAAAGGCTTAGTTGCCGAAAGGATATTTTCATCAATGGCAGAGAATGGCAAACAGGCTGATTTTGTGTTGTGTGTTGGTGATGATAGATCAGATGAAGACATGTTTGAAATAATCAGTAGTTCAATCTCAAGAAATATTCTTTCAGCCAATTCTTCTGTATTTGCCTGCACAGTTGGACAAAAACCAAGCAAAGCTAAGTATTATCTGGATGATACTACTGAAGTAATAAGCATGCTTGAATCTTTGGCAGAAGAATCAGATTCTTCACCCGACTTAGAAGAAATTGGAGATTCTTTTCAAAGGCAAATCGACATAAATGAATATTTGAAGGCTTTTACATTTAGCAAGGAGGATGACATTATGGCCAAGTCGAAGTGTATGATTTACCACTTCATCTTAAAGGATTGGGTATCAGAATGTTTTGATGGCGATGAACAAAGTGATGTGGTCATTAGAGCATTAATAAATTGGAGGAACATGGTGCTCAATATCCCAACTAAAATCATGGCGGTGGGGGGTTTGGTGTTGGTAAGGGATCGTCAGATAAGCTTGGGAGCAAGAAAGGTACTAGCTGGGAGGGGATTTGTTATCTAG 2868 0.4114 MMSRSYTNLLDLASGNFPAMGNSFKERRRMPRVMSVPGIVTEVDDDQAVSVSSDNPSTVSTDRMIIVANQLPLKAKRREDNQGWNFSWNEDSLLLQLKDGLPEEMEVLYVGSLRVDIDPAEQDDVSQYLLDKFKCVPTFLPADVLAKFYDGFCKRQLWPLFHYMLPFSTANSHRFDRSLWEAYVLANKLFFQKVVEIINPEDDFIWVHDYHLMVLPTFIRRRFNRVKLGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTISIKIMPVGIHMGRIETVMKMADEECKARELKQQFEGKTILLGVDDMDIFKGINLKILAMEQMLKQHPKWQGRAVLVQVVNPARGKGIHLEEIHAEIEESCSRINRMYGRPGYEPIIFIDRSVSVAEKVAYYSLAECVIVTAVRDGMNLTPYEYIACRQGISGNGSCSDIRSPKKSMLVISEFIGCSPSLSGAIRVNPWNVEATAEAMNEAISMSDGEKQLRHEKHYRYVSTHDVAYWSRSFLQDMERACADLLRKRCWGIGLSFGFRVVALDPNFRKLSIDAMVSSYKRARSRAILLDYDGTVMPQNSINKSPSNEVISLLDTLCADPRNVVFIVSGRGRNSLSDWFLPCKNLGIAAEHGYFLRWSQSAQWEICGKNMDFGWMQIAEPVMKLYTEATDGSNIETKESALVWQYRDADLGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQDVSKGLVAERIFSSMAENGKQADFVLCVGDDRSDEDMFEIISSSISRNILSANSSVFACTVGQKPSKAKYYLDDTTEVISMLESLAEESDSSPDLEEIGDSFQRQIDINEYLKAFTFSKEDDIMAKSKCMIYHFILKDWVSECFDGDEQSDVVIRALINWRNMVLNIPTKIMAVGGLVLVRDRQISLGARKVLAGRGFVI 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01897 955 SUPERFAMILY HAD-like 593 841 IPR036412 -
Aip03g01897 955 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 853 IPR001830 GO:0003824|GO:0005992
Aip03g01897 955 Pfam Glycosyltransferase family 20 63 546 IPR001830 GO:0003824|GO:0005992
Aip03g01897 955 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 595 797 IPR006379 -
Aip03g01897 955 CDD HAD_TPP 594 833 - -
Aip03g01897 955 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 1 853 - -
Aip03g01897 955 Gene3D Glycogen Phosphorylase B; 56 316 - -
Aip03g01897 955 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 63 549 - -
Aip03g01897 955 Gene3D - 721 852 IPR023214 -
Aip03g01897 955 Gene3D - 592 695 IPR023214 -
Aip03g01897 955 Pfam Trehalose-phosphatase 596 830 IPR003337 GO:0003824|GO:0005992
Aip03g01897 955 CDD GT20_TPS 63 546 IPR001830 GO:0003824|GO:0005992
Aip03g01897 955 Gene3D Glycogen Phosphorylase B; 317 530 - -
Aip03g01897 955 TIGRFAM T6PP: trehalose-phosphatase 590 841 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01897 Aip-Chr3 25115602 25122019 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01897 1 847 Trehalose Biosynthesis Gene Families AT1G06410 77.450 0.0 1380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01897 K16055 - gmx:100800847 1563.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01897 03 25115602 25122019 Aip03g01897 03 25115602 25122019 ECH