Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01830 ATGGAATCCAATGGTGTAGACTATGCTTCCAAATTGCTTGAATCTCAAAGCCATGTATGGCACCACATTTTCAGCTTCATAAATTCCATGTCCCTCAAATGTGCAATTGACTTGGGAATTCCAGATGCCATACACAACCATGGCCAACCCATGCCACTCTCAAAACTCATTTCTTCTCTACAAATCCATCCCAACAAAACACAATACATCCACCGCTTGATGCGGATTTTGACTCATTCTGGCTTTTTCTCTAAACAAATCTCTTCCAAAGGCGATCCAGAATCGAGTTATTCCCTAACCGATGCATCTAAGTTGTTGCTCAAAGACAATCCTATGAGTCTTTTTCCTTTCTTGTCTGCCATGCTTGATCCCATTTTAACAAAGCCGTGGTACGATTTACCGGCATGGTTCAAAAACGATAGTCCCACATCGTTTTACATGAGGCATGGGATGGCACTTTGGGAATATGCTGGTGTTGAGCCAAGACTCAACAAGTTCTTCAATGATGCCATGGAAACCGATACTCCATTTATTTCAAGTATTTTGTTTGACAAGTGTAAGGGTGTGTTTGAAGGGTTGGAGTCTTTGGTTGATGTTGGTGGAGGCACAGGAACTATGACTAAGGCTATTGCTAAGGCATTTCCACAAATGGAGTGTGTTGTGTTTGATCTTCCACATGTTGTTGATGGCTTGCAAGGAAGTGGGAATCTCAAATATGTTGGAGGTGATATGTTTGACTCAATTCCTCCTTCAGATGCCATTTTCTTGAAGTTTATATTGCATGACTGGAATGATGAGAAATGTATCAAAATACTGAAGAAATGCAAAGAAGCAATCACAAGAAGCAAAGGAAGAAAAGGGAAAGTTATTGTCATTGATATGAGAACAGAGAATTCTGTGAAACAGAGCAGGAAAATCATAGTAAGAGTCATAAAGAAGAGTGCATACAGAGCTTCGCTGAATCTGCTCCATCTCCTTTTCCACGTCATACTCCCTCACTTCCTTCAGAAGCCGCAACGTGGAGAGAGTGTACGAGTGGTGAAGGACCTGCAGCAAGGACCAGTTCCCCCAACTCGTTTCAGTTCATCGGATGCTCCGAACTCTCAATCGTTCCTCCTGCTTTAA 1125 0.4204 MESNGVDYASKLLESQSHVWHHIFSFINSMSLKCAIDLGIPDAIHNHGQPMPLSKLISSLQIHPNKTQYIHRLMRILTHSGFFSKQISSKGDPESSYSLTDASKLLLKDNPMSLFPFLSAMLDPILTKPWYDLPAWFKNDSPTSFYMRHGMALWEYAGVEPRLNKFFNDAMETDTPFISSILFDKCKGVFEGLESLVDVGGGTGTMTKAIAKAFPQMECVVFDLPHVVDGLQGSGNLKYVGGDMFDSIPPSDAIFLKFILHDWNDEKCIKILKKCKEAITRSKGRKGKVIVIDMRTENSVKQSRKIIVRVIKKSAYRASLNLLHLLFHVILPHFLQKPQRGESVRVVKDLQQGPVPPTRFSSSDAPNSQSFLLL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01830 374 Pfam O-methyltransferase domain 130 300 IPR001077 GO:0008171
Aip03g01830 374 SUPERFAMILY "Winged helix" DNA-binding domain 10 111 IPR036390 -
Aip03g01830 374 Gene3D - 2 106 IPR036388 -
Aip03g01830 374 PANTHER ORCINOL O-METHYLTRANSFERASE 7 297 - -
Aip03g01830 374 PANTHER O-METHYLTRANSFERASE 7 297 IPR016461 GO:0008168
Aip03g01830 374 MobiDBLite consensus disorder prediction 355 374 - -
Aip03g01830 374 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 370 IPR016461 GO:0008168
Aip03g01830 374 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Aip03g01830 374 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 296 IPR029063 -
Aip03g01830 374 Gene3D Vaccinia Virus protein VP39 107 330 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01830 Aip-Chr3 23058865 23061623 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01830 30 307 Monolignol Biosynthesis Gene Families AT5G54160 34.266 6.95e-47 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01830 - K16040 gmx:100781008 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01830 03 23058865 23061623 Aip03g01830 03 23058865 23061623 ECH