Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01828 ATGGAATCCAATGGTGTAGACTATGCTTCCAAATTGCTTGAATCTCAAAGCCGTGTATGGCACCAACTTTTCAGCTTCATAAATTCCATGTCCCTCAAATGTGCAATTGACTTGGGAATTCCAGATGCCATACACAACCATGGCCAACCCATGCCACTCTCAAAACTCATTTCTTCTCTACAAATCCATCCCAACAAAACACAATTCATCCACCGCCTGATGCGAATTTTGACTCATTCTGGCTTTTTCTCTAAACAAATCTCTTCCAAAGGCGATCCAGAATCGAGTTATGCCCTAACCGATGCATCCATGTTGTTGCTTAAAGACAACCCCATGAGTCTTTTCCCTTACTTGTCCGTCGTATTTGATCCAATTTTAACAAAGCCGTGGTGCGAGTTGCCAGCATGGTTCAAAAATGATAGTCCCACCCCGTTCTACATGACACATGGGATGGCACTTTGGGACTATGCTGGCGTTGAGCCAAGACTCAATAAGCTCTTCAATGATGCCATGGAAACCGATACTCCATTTGTTTCAAGTGTTTTGTTTGACAAGTGTAAGGGTGTGTTTGAAAGGTTGGAGTCTTTGGTTGATGTTGGTGGAGGCACAGGAACTATGACTAAGGCTATTGCTAAGGCATTTCCACAAATGGAGTGTGTTGTGTTTGATCTTCCACATGTTGTTGATGGCTTGCAAGGAAGTGGGAATCTCAAATATGTTGGAGGGGACATGTTTGACTCAATTCCTCCTTCAGATGCCATTTTCTTGAAGTATATATTGCATGACTGGAATGACGAAAAATGTATCAAAATACTGAAGAAATGCAAGGAAGCAATTATCACAAGAAGCAAAGGAAGAAAAGGAAAAGTTATTGTCATTGATATGGTAGAGGAGTCTGCTGTAGGGTCGGCAGATGGGAAAATGACTGATACACCAGTGGTGGGATTGACTGATAACTTGGATGAGATGGCAGACCTGGCGGGTAATAAGGTAGCACTGTCGGCTGGTATGGTCCTAAAAGTGGTATCGGCAGATATACTAGAGGAGTCTATGCTGCCTCATACGTCAAAAAATTTTGTGTATAATCCTACTGTGGTGGAGTCTGCTACTTCAATTCGCTCTAACAAATCGTCGTCGCCGTCCTGCTGTGCTACTGAGGAGGATGGATCATGCTGCTATTTCCTTGATGAGGAACCTGGCATGAAGTCCCTCGCAATATTCGCCTTATGCCCAGCAAAGAAAGTGGTTATGGGATATCTTGTTGTGGCTGCCAGGGGAATCTCCGTAGGTGGGGCTGTAACCCTCAGATCAGCCAATGCATCATTTCCAAAAGGAAAATGCAACAATACACGCTCTTTTCCACCAAATCAAGTAGTCCTGTGTGGGTCGAGGATCTGGGACACCCTCAATAGTGACCATCCGTTGCTGCTGGTCGTGTTCCCTCCACATATCATACCAATCACAGTATCGATCAGGCCACCACACATCGTCACCCCAGGTCGTCCAGAACAAAAAGATGGTCTATATTGTCCGGGTCCTCTGGCCAATGTTGCTGCCCACCTTGCTGTCGCTTGA 1575 0.4495 MESNGVDYASKLLESQSRVWHQLFSFINSMSLKCAIDLGIPDAIHNHGQPMPLSKLISSLQIHPNKTQFIHRLMRILTHSGFFSKQISSKGDPESSYALTDASMLLLKDNPMSLFPYLSVVFDPILTKPWCELPAWFKNDSPTPFYMTHGMALWDYAGVEPRLNKLFNDAMETDTPFVSSVLFDKCKGVFERLESLVDVGGGTGTMTKAIAKAFPQMECVVFDLPHVVDGLQGSGNLKYVGGDMFDSIPPSDAIFLKYILHDWNDEKCIKILKKCKEAIITRSKGRKGKVIVIDMVEESAVGSADGKMTDTPVVGLTDNLDEMADLAGNKVALSAGMVLKVVSADILEESMLPHTSKNFVYNPTVVESATSIRSNKSSSPSCCATEEDGSCCYFLDEEPGMKSLAIFALCPAKKVVMGYLVVAARGISVGGAVTLRSANASFPKGKCNNTRSFPPNQVVLCGSRIWDTLNSDHPLLLVVFPPHIIPITVSIRPPHIVTPGRPEQKDGLYCPGPLANVAAHLAVA 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01828 524 PANTHER ORCINOL O-METHYLTRANSFERASE 7 299 - -
Aip03g01828 524 Gene3D Vaccinia Virus protein VP39 107 334 IPR029063 -
Aip03g01828 524 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Aip03g01828 524 PANTHER O-METHYLTRANSFERASE 7 299 IPR016461 GO:0008168
Aip03g01828 524 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 356 IPR016461 GO:0008168
Aip03g01828 524 Gene3D - 3 106 IPR036388 -
Aip03g01828 524 Pfam O-methyltransferase domain 130 299 IPR001077 GO:0008171
Aip03g01828 524 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 298 IPR029063 -
Aip03g01828 524 SUPERFAMILY "Winged helix" DNA-binding domain 10 111 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01828 Aip-Chr3 22968867 22978113 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01828 30 296 Monolignol Biosynthesis Gene Families AT5G54160 34.191 1.03e-43 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01828 - K16040 gmx:100781008 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01828 03 22968867 22978113 Aip03g01828 03 22968867 22978113 ECH