Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01822 ATGCTGATCCCTCATCATCAGAATCAGAATCCAACTACTACTCCTCCTCCTTCTTTGAAGAGGAAGAGAAACCTCCCAGGAAACCCAGATCCGGAAGCGGAAGTAATAGCCTTATCCCCAAAGACACTAATGGCTACAAACAGGTTCTTGTGTGAAACCTGTGGGAAGGGTTTCCAAAGGGATCAAAACCTTCAACTCCATAGAAGAGGACACAACCTTCCATGGAAGCTAAAACAAAGAACAAATAAAGAACCAAAGAAGCGTGTATACGTGTGTCCGGAGAAAACATGTGTCCACAACCACCCTTCAAGGGCTTTGGGAGACTTGACCGGAATCAAGAAGCACTTTTGCCGGAAGCACGGCGAGAAGAAGTGGAAGTGCGACAAATGCTCGAAGCGTTATGCGGTTCAGTCCGATTGGAAAGCCCACTCCAAAACCTGTGGTACAAGAGAATACAAGTGTGATTGTGGAACCATCTTTTCACGGAGGGATAGTTTCATAACTCACAGGGCATTTTGTGATGCATTGGCAGAAGAAACAGCTAGGGTAAATGCAGCATCAAGCATAAACAACTCAACATTAGGGGCTAATAATAATAACAATAACATTATTGGTTACAATAACATGATGATAAGAACCTCCATGGCCCCTCATCATAATAATAATAATAACATGGCAACCCAATTTGCTTCAATTTGCAATAAGCCAATTCCATTCCCTGAAGAAGCCACAAATAACCAAACAACAACAAGAGGATTATCCCTTTGGATGGATCATCATCATCATCATCGTCAAGAAGCAACAATGGCTACTAATAACAATAATTACCATCTGAACTGGGTATTCGGATCGAAAATTTCGACCAATCCAAGCCAAGATCTAAGTAGCAACACTACTATTACTAGTACTACTACTACATCGCTTCCAATACTAGGAAGCATTGTTAATGTTCCTTCATTGTATAGCTCACAACACCAACCCCATCAAACATGTGCCTCTTCGTCGTCGGCGAACATGTCGGCGACGGCCTTGTTGCAGAAAGCCGCTCAAGTTGGTGCAACCTCAAGTGATCCATCATCATTCTTGGGGGTATTAGGGTTGAAATGTAGCAATGGTGGTGGCCAAGGGCAAGATGGGAATAACAATAAGTTTTGTGGGGTGTATGGTTCAAGTTTGGTGCTAACAAGTAGTAGTAATAATATTAATACAGAGGCAGAGAAGAATGAATTGTCACAAATGCACCCTTCAAAGAGGAGAAATGAGGAGAGTGGAGGAGGGCAAACTAGGGATTTCCTTGGTGTTGGGGGTGCAAACCACCATTTGCCACCCTTTATCAACCAAAGCTTGGATTTCATTTGA 1359 0.4283 MLIPHHQNQNPTTTPPPSLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTNKEPKKRVYVCPEKTCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASSINNSTLGANNNNNNIIGYNNMMIRTSMAPHHNNNNNMATQFASICNKPIPFPEEATNNQTTTRGLSLWMDHHHHHRQEATMATNNNNYHLNWVFGSKISTNPSQDLSSNTTITSTTTTSLPILGSIVNVPSLYSSQHQPHQTCASSSSANMSATALLQKAAQVGATSSDPSSFLGVLGLKCSNGGGQGQDGNNNKFCGVYGSSLVLTSSSNNINTEAEKNELSQMHPSKRRNEESGGGQTRDFLGVGGANHHLPPFINQSLDFI 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01822 452 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
Aip03g01822 452 MobiDBLite consensus disorder prediction 1 19 - -
Aip03g01822 452 MobiDBLite consensus disorder prediction 410 425 - -
Aip03g01822 452 PANTHER F-BOX ASSOCIATED PROTEIN 19 450 - -
Aip03g01822 452 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 71 IPR013087 -
Aip03g01822 452 MobiDBLite consensus disorder prediction 1 31 - -
Aip03g01822 452 Gene3D Classic Zinc Finger 103 183 - -
Aip03g01822 452 Gene3D Classic Zinc Finger 28 102 - -
Aip03g01822 452 MobiDBLite consensus disorder prediction 406 435 - -
Aip03g01822 452 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 450 - -
Aip03g01822 452 SUPERFAMILY beta-beta-alpha zinc fingers 48 145 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01822 Aip-Chr3 22795306 22798223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01822 16 435 IDZ Gene Family AT1G03840 51.828 3.01e-137 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip03g01822 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01822 K25870 - ahf:112767274 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01822 03 22795306 22798223 Aip03g01822 03 22795306 22798223 ECH