Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01820 ATGACTGAGTGCAATGAACATGAAAACAATCATGGCAACATCATAGTGGAGGGAAGAAAAGACAGTTTAATTAGAACTTGTCCAACATGTGGTCATCACATCAAATGCCAAGATCAGGGTGGTGGACTTCATGACTTACCTGGACTTCCAGCTGGAGTGAAGTTTGATCCAACAGATCAAGAGATTCTTGAACATTTGGAAGCAAAAGTGCGATCTGATATTCACAAGCTTCACCCTTTAATTGATGAGTTCATCCCAACTCTTGAAGGAGAGAATGGAATCTGCTATACTCATCCAGAGAACTTGCCAGGAGTAAGCAAGGATGGGTTGATCCGGCACTTCTTCCACCGGCCGTCGAAAGCATACACAACCGGAACAAGGAAGAGGAGGAAGGTGAACTCGGACGAAGAGGGAAACGAAACCCGTTGGCACAAAACAGGCAAGACCAGACCAGTCTATATTAGGGGGAAGCTGAAAGGATACAAGAAAATCCTTGTTCTCTACACAAACTATGGTGGGAAGCAAAGGAAGCCAGAGAAAACCAATTGGGTGATGCACCAATACCACCTTGGCAATGATGAAGAGGAGAAAGAAGGGGAGTTGGTTGTTTCCAAAGTGTTCTACCAAACACATCCTAGACAATGTTCTTCACTCTTGGTCAATAACAACAAAGACTCTTCAACAACACTTGTCAAGGGTAATAATAATAATGGGTTTGTTGAGTATTACCATTCAAATTTCATATCATTTGATCAAGGGGAACACCAACATAGATCTAGTGGGGCTCAAGTCGTCATTTCACATTTTCCTCTCCATGAAGCTGCTCCTAATTATCATTCTTTGAATCAAAAGGAGTAG 858 0.4242 MTECNEHENNHGNIIVEGRKDSLIRTCPTCGHHIKCQDQGGGLHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPENLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVNSDEEGNETRWHKTGKTRPVYIRGKLKGYKKILVLYTNYGGKQRKPEKTNWVMHQYHLGNDEEEKEGELVVSKVFYQTHPRQCSSLLVNNNKDSSTTLVKGNNNNGFVEYYHSNFISFDQGEHQHRSSGAQVVISHFPLHEAAPNYHSLNQKE 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01820 285 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 276 IPR044799 GO:0003700
Aip03g01820 285 SUPERFAMILY NAC domain 44 209 IPR036093 GO:0003677|GO:0006355
Aip03g01820 285 ProSiteProfiles NAC domain profile. 49 209 IPR003441 GO:0003677|GO:0006355
Aip03g01820 285 MobiDBLite consensus disorder prediction 128 144 - -
Aip03g01820 285 Gene3D NAC domain 58 213 IPR036093 GO:0003677|GO:0006355
Aip03g01820 285 MobiDBLite consensus disorder prediction 123 144 - -
Aip03g01820 285 Pfam No apical meristem (NAM) protein 50 190 IPR003441 GO:0003677|GO:0006355
Aip03g01820 285 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01820 Aip-Chr3 22757058 22764455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01820 25 215 NAC Transcription Factor Family AT4G28500 79.688 5.72e-111 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip03g01820 NAM 2.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01820 - - gmx:100797459 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01820 03 22757058 22764455 Aip03g01820 03 22757058 22764455 ECH