Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01813 ATGGAGGGTGGTGGTTCAGAAGAAGAGAAGAGGAAGGAGAAGCCAGCGGAGGTTGAGAACAAGATCAAGCGCAGAATGAAGACTGCTTTTCAGTTGGAAGTTCTGGAGAAAACTTATGTTGGGGAGGCTTACCCTTCAGAAGCAGTGCGAGCTGAGTTATCTGCGAAGCTGGGTCTGTCTGATCGTCAACTGCAAATGTGGTTTTGTCACCGGAGGCTGAAGGATAGGAAATCAGCACCAACAGCGAAGAAGCCCCGAAATGATCACCCGCCTGTGGCACCGGATTCAGTGCCCGAAGGAGAGGGTCTTGAGCAAATGGCAGTGGCTGATGCCATGCATGATTGTGGTTTAGCTTCTGGGTTGAAGCCATTTGGATATTCGGATCCGAGGCGAGTTGTTCCAAATCCTTCGATTTCCTTTACTGGAAGAGGAGCTGGATTGCCAACAATGGAGAACAATAGTTACTATGAACCACATCAGGCCATCGAGGTGCTGCGAGCAATTACATTTGTGGAGAGACAGTTGGGTCAGCCATTAAGAGAGGATGGACCAATTCTGGGAATGGAATTTGATTCCTTGCCCCCAGGGGCATTTGGTGCCCCAATAGAGGAAGTGACACTGGGACAGCATAGGCATTCTGGAAGCCCTTTCGAGGCAAAAATTTATGATCAACGAAACAAGGGCATTCCAAGGACTCTCCACGAGTATCAATTTATTCCAGAGCAGCTAACTGTTAGAAATGAGACATTTGACAGAGTTGCCCCCACTATCCATTACAGTTCTCCTGATGGCATTTCACATTCCAGGACTTTACTACCTAGCCAGAAATCTTTGCTTGGTGGGAATGAATCTACACCATATGGATATGGAGTTCAAGATCAGATGCCTGCTTTGAATCATTTGTCTCAGCATGTCAGGCAGAATCATGTTTTGCCTTCTGCTTCTGGACAGATTGAGGGTATTCCACGAAAGAACACATTTGTTGATGTAACAGTTGTTACTCATAGTGGGGTTCACCCAATAACTCTGACCGACACTGCACTAGTGCCATCTGACAACACGGTTATCCATGAGGAGGAACCTTCAAGGCTTCAGAGGAAGCGAATGAATGAAGAAGCTAGAATACGACGTGAACTTGAAGCTCATGAGAAAAGAGTTAGAAAAGAGATTGAAAAACAGGATATTCTAAGGCGAAAGAGGGAAGAGCAAATAAAGAAAGAGATGGAGAGGAATAACCGTGAAAGGCGGAAAGAAGAAGAAAGGTTGTTACGTGAAAGACAGCGAGAGGAGGAGAGGTACCAAAGAGAACAGAGGCGTGATCTGGAGCGTAGGGAGAAGCTTTTACAGAAAGAATCAATAAGAGCTGAGAAACTGAAACAGAAGGAAGAACTACGCAGGGAGAAAGAGGCAGCAAGGATCAAAGCTGCTTATGAGAGAGCTCTTGCCCGCAGAATGACCAGAGAATCAATGGGACTTATTGAAGATGAACGTCTGGAACTCATGGAACTAGCTACATTGAAGAAGAGACTTCCTTCGATACTGGCTCTTGATTATGAAACTATGCAAAATCTCGAGTTATATAGAGATGGGCAAACACCATTCCCACCCGAGTCTGTGCAGTTGAAAAAACCATTTTCAATCCAACCTTGGTCAGACTCTGAGGAGAAAACAGGAAATCTTCTCATGGTTTGGAGGTTCTTGAATACTTTTGCTGATGTTCTTGGAATATGGTCGTTTACCTTGGATGAACTTATTCAAGCTTTCCATGACTATGATCCAAGGTTGTTAGGTGAGATTCATATTGCTCTTTTGAGATCTATTATGAAAGATATTGAAGATGTTGCAAGAACTCCCTCCACTGGATTAGGAGGTAACCAAAACAATGTTGCCAATTATGGTGGGGGGCATCCTCAAGTAGCTGAAGGGTTTGCTTTGTCAGCTGGATTTGGCCCAAAATTGCAGAGACATAGTGAATCGGTGCATCCTTGTGATAACAATGAGGGTCATGATTGTAAAGACATAATCTCTCATCTACGCAGTGGAGCTGCAGTAAAAAATGCAGTTGCTATCATGCAAGAGAAGGGATTATCTAAGCCAAGTAGATCAAGACATCGCTTGACTCCTGGAACTGTTAAATTTGCTGCATTTCACGTCCTTTCTGTTGAAGGGAGCAATGGCCTCAATATATTGGAAGTTGCAGAGAAAATTCAGAAATCTGGGCTCCGTGATCTTACAACAAGCAAAACTCCAGAGGCTTCTATATCTGCTGCATTGTCTAGAGACACAAAGCTATTTGAAAGGATAGCTCCTTTGACGTATTGTGTACGTCCTGCATATCGAAAGGATCTGTCTGATGCTGAAGCAATTTTTTCAGCTGCCAGGGAAAGAATCAGGATATTCAAAAGTGGATATATGGATGCTGGTGAAGCAGAAGAGGGGGGAAGAGAAGATGATTCTGAAAGTGATGTAGCAGAAGATATTGAAACTGATGATTTAGGAGCTGAAACTAATATAAAAAATGGGGGTTTCAGTTCTGTAGAATTTAATTCAGAAACCGTAATGAGAATTAGAAAGGACACTGGTAAGGTTTCTCAAACACTTGGTTGCTATGACCATGAGAAACTGGATGAGGATATACTGTCAATTGTTTCTGAAGGCATTGATATGCACAAAGGGATTAGTGCCTCTTGTGATATTGCTGTTTGCAGCAATGATGTGTCTAATCCTAATCTTGAAGGTATGGATATTGATGAAAGCATTCCAGATGAGTCGTGGGTACAGGGGTTGATGGAAGGAGAGTACTCTGACCTCAGTGTTGAGGAGCGTCTTAATGCTCTCGTTGCTTTGGTTAATGTGGCAATTGAAGGGAACTTAATTCGTGTTACACTTGAGGATCGTCTAGAAGCTGCAAATGCTTTAAAGAAGCAGATGTGGGCAGAAGCACAGCTGGGTAAACGTCGTATCAAAGAGGACTACTTTGTTAAGATGCATCCTGTATCTAATTTCAGCAACAGGAGTGAATCAAATAGTGCATTTCCATCACTTGAGGACAAACAGAAGCCATTCCTTTCTGTTGATAACAAGAATGACGAGGCTTTATTAACCCCTCTTGGCCGGTGCAATCAGATCAACGAACTACTGGAAAATCCAAATCATATTGAGAGTTCCTCATTAGAAGTTAGCCACCAGCTCCATCAAAGTTCTGCTAACCAAGATAATTATTCTCTTCAACAATTTGGATTTGCTCCTGAAAAATCAAGGTCAAATATAAAATCTTACATTGGTTACTTGGCAGAACAAACCTACATGTATAGGACATTGCCTCTTGGCTTGGATCGCAGACATAACCGATACTGGCAGTTCATTGCATCTGCTTCTCCAAATGATCCTGGTTGTGGCAGGATTTTTGTGGAGTTGCATGATGGTTGTTGGAAATTGATTGATTCTGAAAAGGGATTTGATTCCCTATTGGGTTCGTTGGATGTACGTGGGATCAGGGAGTCACACTTGCATATGATGTTGCAAAGTATTGAGATGGCGTTCAAGGAATCTATTAGAAGGAATGTCCATAATGGTGATGCAAGAATGGAGAATGGGGACACTGTCAAGAGGCTCAAGACAGAAGCTTTTGAAGTGGATACGAACAATTATTGTAGTGATATTCACCATCCTACATCTGTGTGCATCGATAATTCAGATGCTTCAGAGGTCTCGACATCTTTTGCAGTTCAGCTTGGAAGAAATGAAGCTGAAAACAGGGATGCTCTTCTGAGATATCAGGACTTTGAGAAATGGATGCTAAATGAATGCCTAAATTCGTCAATATTATGTGCCTTGAAGTTTGGGAAGAGGAGGCGTAGCAAACTGTTGACTGTGTGTGATTCATGTCATGATGTTTATTTCTTTGATAGAATCAAATGCCCTTCCTGCAATAGAACTCTCAATGCTCACGGCAAGGCAAAGATTGACACTGATTATTTTCATGTTTCATCTTATCTTCCTTTGAGAATGAGATTGCTGAAGGTCTTATTGTCAATTGTTGAGGTTTCAGTTCCCGAAGAAGCTTTTCACGGTATTTGGACCAACAGTTATAGGAAATCATGGTGTACAAAACTGGATGCTTGCTCATCAACTGAAGACCTCCTGGAGATATTAACTGTATTAGAAAGCGCTATAAAGAGGGAGTATTTGGATTCAAACTATGAAACTACCTCTGAGCTGCTGGGTTCGAGAAGTTCTTCTGGATGTCCTCCAACTAATGATTTTGTAGGTGCTGAAAGGATACTTCCATGGGTGCCGTGCACAACAGCTGCGGTGGCTCTGAGACTCATGGAACTCGATGCATGCACCTCTTACACCTTTCAGCAGAAGATGGAGTCTGAAAAGGATAAAAGAATTGGAATTGTTATGAAGCTTCCGACAAAATATGCTTCTGCCAAATCATCTTGCCGTGATAGTGCAATTGAAGAAAGAGGACAAACGTCCCAACAGGGACAAAGATCCCGGCAGGGACAAAGCATGCATAAGGTTAAGCATACTGTTGAAAACATGGTTGGTCTTGGTGCTGGCCTTGCAAGCTACAGCAGAGGACAAAGGTCCCGACAGGGCCGGAGCCATTCTTGTGCGAGTGGGAGATCACAAGGACGGGTTCTTAGTTCAAGACATGATTCTAGAAAGAGAAGCACGACCTCTAGCAGCATGAGAATAGGAAATTTACTTGGATGGAAAGGGAGATCATGTAGGCATGCAGAACAAAATGTACGTGCTCGTCGGAGTGTTCGAAGTAGACAGAAACCGGCTGTCAAGGTCTGTGTCACTGGTGTTGAGAAGGACACTCCAGATGATATCACAGGGTATACAGCTGGTATCTTTATCAATGAAAAGATGAATGGAAGTGAAGTGGAAGCTGCTGCTAGAAGTGCTAGCAGCTCAGAAAAATTGGCCTATGAAAATGATATTTATCAGTCAACAGTTGATGCGTATGAATATCTAATTGATGATAATAATGATGGATATGAGGGTGGATTTAGTGGAAAATCTGAGAACTTTGTAGAGGGGAGCAACCATAATGTGGATGATGATGAAAATGAGGACGTTGATGACAATGATGATGAAGACGGACAAGTTGATGTTGAAGATTATATAAGCCACAAATCAGATACTGACGCCGGAGAAAATGCCGACCAGAACATGGATCCTAATGGAACAGATTCAACCTCATCAGAGTCCAGTGATTAA 5238 0.4276 MEGGGSEEEKRKEKPAEVENKIKRRMKTAFQLEVLEKTYVGEAYPSEAVRAELSAKLGLSDRQLQMWFCHRRLKDRKSAPTAKKPRNDHPPVAPDSVPEGEGLEQMAVADAMHDCGLASGLKPFGYSDPRRVVPNPSISFTGRGAGLPTMENNSYYEPHQAIEVLRAITFVERQLGQPLREDGPILGMEFDSLPPGAFGAPIEEVTLGQHRHSGSPFEAKIYDQRNKGIPRTLHEYQFIPEQLTVRNETFDRVAPTIHYSSPDGISHSRTLLPSQKSLLGGNESTPYGYGVQDQMPALNHLSQHVRQNHVLPSASGQIEGIPRKNTFVDVTVVTHSGVHPITLTDTALVPSDNTVIHEEEPSRLQRKRMNEEARIRRELEAHEKRVRKEIEKQDILRRKREEQIKKEMERNNRERRKEEERLLRERQREEERYQREQRRDLERREKLLQKESIRAEKLKQKEELRREKEAARIKAAYERALARRMTRESMGLIEDERLELMELATLKKRLPSILALDYETMQNLELYRDGQTPFPPESVQLKKPFSIQPWSDSEEKTGNLLMVWRFLNTFADVLGIWSFTLDELIQAFHDYDPRLLGEIHIALLRSIMKDIEDVARTPSTGLGGNQNNVANYGGGHPQVAEGFALSAGFGPKLQRHSESVHPCDNNEGHDCKDIISHLRSGAAVKNAVAIMQEKGLSKPSRSRHRLTPGTVKFAAFHVLSVEGSNGLNILEVAEKIQKSGLRDLTTSKTPEASISAALSRDTKLFERIAPLTYCVRPAYRKDLSDAEAIFSAARERIRIFKSGYMDAGEAEEGGREDDSESDVAEDIETDDLGAETNIKNGGFSSVEFNSETVMRIRKDTGKVSQTLGCYDHEKLDEDILSIVSEGIDMHKGISASCDIAVCSNDVSNPNLEGMDIDESIPDESWVQGLMEGEYSDLSVEERLNALVALVNVAIEGNLIRVTLEDRLEAANALKKQMWAEAQLGKRRIKEDYFVKMHPVSNFSNRSESNSAFPSLEDKQKPFLSVDNKNDEALLTPLGRCNQINELLENPNHIESSSLEVSHQLHQSSANQDNYSLQQFGFAPEKSRSNIKSYIGYLAEQTYMYRTLPLGLDRRHNRYWQFIASASPNDPGCGRIFVELHDGCWKLIDSEKGFDSLLGSLDVRGIRESHLHMMLQSIEMAFKESIRRNVHNGDARMENGDTVKRLKTEAFEVDTNNYCSDIHHPTSVCIDNSDASEVSTSFAVQLGRNEAENRDALLRYQDFEKWMLNECLNSSILCALKFGKRRRSKLLTVCDSCHDVYFFDRIKCPSCNRTLNAHGKAKIDTDYFHVSSYLPLRMRLLKVLLSIVEVSVPEEAFHGIWTNSYRKSWCTKLDACSSTEDLLEILTVLESAIKREYLDSNYETTSELLGSRSSSGCPPTNDFVGAERILPWVPCTTAAVALRLMELDACTSYTFQQKMESEKDKRIGIVMKLPTKYASAKSSCRDSAIEERGQTSQQGQRSRQGQSMHKVKHTVENMVGLGAGLASYSRGQRSRQGRSHSCASGRSQGRVLSSRHDSRKRSTTSSSMRIGNLLGWKGRSCRHAEQNVRARRSVRSRQKPAVKVCVTGVEKDTPDDITGYTAGIFINEKMNGSEVEAAARSASSSEKLAYENDIYQSTVDAYEYLIDDNNDGYEGGFSGKSENFVEGSNHNVDDDENEDVDDNDDEDGQVDVEDYISHKSDTDAGENADQNMDPNGTDSTSSESSD 1745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01813 1745 CDD homeodomain 21 78 IPR001356 GO:0003677
Aip03g01813 1745 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 7 1745 IPR044977 GO:0006357
Aip03g01813 1745 MobiDBLite consensus disorder prediction 409 439 - -
Aip03g01813 1745 ProSiteProfiles 'Homeobox' domain profile. 18 78 IPR001356 GO:0003677
Aip03g01813 1745 MobiDBLite consensus disorder prediction 1711 1725 - -
Aip03g01813 1745 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 922 960 IPR028942 -
Aip03g01813 1745 SMART testlast3 554 613 IPR018501 -
Aip03g01813 1745 MobiDBLite consensus disorder prediction 1672 1745 - -
Aip03g01813 1745 MobiDBLite consensus disorder prediction 1528 1550 - -
Aip03g01813 1745 ProSiteProfiles DDT domain profile. 554 613 IPR018501 -
Aip03g01813 1745 Pfam HB1, ASXL, restriction endonuclease HTH domain 709 776 IPR007759 GO:0006355
Aip03g01813 1745 Pfam Homeodomain 23 77 IPR001356 GO:0003677
Aip03g01813 1745 Coils Coil 372 474 - -
Aip03g01813 1745 MobiDBLite consensus disorder prediction 1488 1504 - -
Aip03g01813 1745 MobiDBLite consensus disorder prediction 1482 1509 - -
Aip03g01813 1745 Pfam DDT domain 556 610 IPR018501 -
Aip03g01813 1745 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1105 1177 IPR028941 -
Aip03g01813 1745 MobiDBLite consensus disorder prediction 1726 1745 - -
Aip03g01813 1745 MobiDBLite consensus disorder prediction 1691 1710 - -
Aip03g01813 1745 MobiDBLite consensus disorder prediction 75 99 - -
Aip03g01813 1745 MobiDBLite consensus disorder prediction 1527 1568 - -
Aip03g01813 1745 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 7 1745 - -
Aip03g01813 1745 SMART HOX_1 20 82 IPR001356 GO:0003677
Aip03g01813 1745 ProSiteProfiles HARE-type HTH domain profile. 709 778 IPR007759 GO:0006355
Aip03g01813 1745 Gene3D - 11 91 - -
Aip03g01813 1745 MobiDBLite consensus disorder prediction 75 90 - -
Aip03g01813 1745 SUPERFAMILY Homeodomain-like 19 77 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01813 Aip-Chr3 22691492 22706387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01813 1 1464 Homeobox Transcription Factor Family AT5G44180 47.269 0.0 1212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Aip03g01813 WSD 4.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01813 - - gmx:100797480 1958.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01813 03 22691492 22706387 Aip03g01813 03 22691492 22706387 ECH