Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip03g01807 ATGCTTGGTGTGTCATCACCTCCTGTGGGGAGTACAAGAAGAGATGAAAGAATGGAGAGCTTCAAGTCGATTGGGGTGTCATCAAAAGACGATGAATTTGGCGAACTGTCCGAAGGAAGCTTGTTGGAGAGCATCAATTTTGATGACCTCTTCGTCGGCATCAACATGGAAAGTGATGTGTTGCCAGATTTGGAGATGGAGGCTGATGTCTTTGCCCAATTTTTCGACAACCCTAAGGCAGACCAATCTTCAATTCACAATAAACTTGCTTCCAACAAGAATGAGGAGTCTATGGTTGTGAATCCTCCTACAAAGTATGCTGGAAAAGGAAGAAAACCATCGTCTAAATCCAAGAGTAATAATCCTCAAGCCAAGATTAAAAAAGTCAAGGTGGATTGGACCCCAGAGTTACATAGGAGATTTGTACAAGCAGTGGAACAACTTGGAGTGGATAAGGCAGTACCTTCTAGGATTTTGGAGATTATGGGAATTGATTGCCTCACTCGCCATAACATTGCAAGCCACCTTCAGAAATATAGATCCCATAGGAAACATTTACTAGCGCGTGAAGCTGAAGCAGCAAATTGGAATCAAAGGAGACAAATGTATGGAGGGAAGAGAGATGTGAGTAGTCCATGGCTAGCACCTACCATGGGTTTCCCTCCAATCACTTCAGTGCACCATTTCAGACCATTACATGTATGGGGACATCCCTCCATGGACCAATCTTTCATACACACGTGGCCTAAAAATCCCACTCATTCACTCTCGCAGTCGCAGCCGTGGGTGCAACCTGTTGCTCTCCCGTTCTGGCATCCTCACCACCAACTAGCTCAAAACATGCTAACCCCAGGATCACCGTGTTTTCCACAGCCTCTGACAACAAGGAAATATGGATCAGGAGGTGTGGCAGGCACTATTATTCCAGTAACATCACCACATCCACATGTTATGTACAAAGCAGCAGATCCTCCCATTAACGGCCTCTCCAGCGCCAACCCAAACCCCATCATTGACTTCCATCCGTCAAAGGAGAGCATAGATGCAGCTATTGGAGATGTTCTATCAAAGCCATGGCAGCCACTACCTCTTGGACTTAAAGCTCCAGCACTTGACAGTGTTCTAACTGAATTACAAAGACAGGGAATTTCAAATATTCCACCCTCTTGTGCTTGA 1176 0.4541 MLGVSSPPVGSTRRDERMESFKSIGVSSKDDEFGELSEGSLLESINFDDLFVGINMESDVLPDLEMEADVFAQFFDNPKADQSSIHNKLASNKNEESMVVNPPTKYAGKGRKPSSKSKSNNPQAKIKKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAANWNQRRQMYGGKRDVSSPWLAPTMGFPPITSVHHFRPLHVWGHPSMDQSFIHTWPKNPTHSLSQSQPWVQPVALPFWHPHHQLAQNMLTPGSPCFPQPLTTRKYGSGGVAGTIIPVTSPHPHVMYKAADPPINGLSSANPNPIIDFHPSKESIDAAIGDVLSKPWQPLPLGLKAPALDSVLTELQRQGISNIPPSCA 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip03g01807 391 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 128 182 IPR006447 GO:0003677
Aip03g01807 391 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 12 88 - -
Aip03g01807 391 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 82 391 - -
Aip03g01807 391 Gene3D - 125 186 - -
Aip03g01807 391 Pfam Myb-like DNA-binding domain 131 180 IPR001005 -
Aip03g01807 391 PANTHER TRANSCRIPTION ACTIVATOR GLK1 82 391 IPR044825 GO:0003700|GO:0045893
Aip03g01807 391 PANTHER TRANSCRIPTION ACTIVATOR GLK1 12 88 IPR044825 GO:0003700|GO:0045893
Aip03g01807 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 125 184 IPR017930 -
Aip03g01807 391 MobiDBLite consensus disorder prediction 1 23 - -
Aip03g01807 391 MobiDBLite consensus disorder prediction 89 126 - -
Aip03g01807 391 SUPERFAMILY Homeodomain-like 126 185 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip03g01807 Aip-Chr3 22573103 22580936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip03g01807 1 251 G2-like Transcription Factor Family AT5G44190 42.806 2.00e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aip03g01807 Myb_DNA-binding 4.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip03g01807 - - gmx:100775671 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g01807 03 22573103 22580936 Aip03g01807 03 22573103 22580936 ECH